Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0221 ATGAGTTGGAGGACTTTACTCTGCAGGCATACGATCAAGAAACTACCTAGACTCAATGGAACTTCACTATCTCGTTACTGTGATTTTTGTAGAAATAGTTCCCCTGTCGCACTTCCAACTTTTCCTTCAATTCGTTCTTTTGATCACGCTTATGGCTCGACTACCTTCCAATCACTTCAGTCTCCAAACTTCATTTCGCCCTTCTCGAGATACCTTCATTCTACTCAACTAAGTAAACTTAGCAAGTCGGACAATGACCCAAAAGTTAATCCGGAGGAGGAGGAGGAGGAGGATGATGATGGAATGATGAACGAATTTTTGTCACGATTTGTGTGGGTAATGCGTAAGAAGCTCACCGAAGTATACCCGGGTTCTGATAAACAGACGATTGATGGCATGCTACTGATCATCGTTAGCAAGGTTGTGTCTGAATTCGGAAAGGGTGGGCTTGAGCATAGAGTTGATGCGGCGGTCTCTCCTTCACAAGAGTTCAGTGAGGATTTGTGGAGGACGGTATGGGAAGTAAGCAATATGGTATTAGATGATATGAACAAGGAATGGAAGAAGGAAAAATTGAAGGGTTTTTTGCAGAACGAAGAAGTGAAGGAGATGTGCAGGTTTGCTGGCGAAGTTGGTGTTCGTGGAGATATGCTTCGAGAGCTTAGATACAAGTGGGCGCGAGAGAAAATGGAGGAACATGAATTCTATGAGAATTTGGAGCGCCTGAGGAAAGAGGCGCAAGCTGAAGAAAAAGGAGAAACAAAGAGCAAGGAGGTCGATGTTTTTGGGGAGAAATCTAACGTCGTTAGTCTTCCCAAGAGACGAGGAAAGATAAACTACAAGATATATGGGCTAAATCTCTCTGATCCGAAGTGGGCAGAAGTGGCTGACAGACTCCATGAGACAGGAGAAATCATTTGGCCACAGGAGCCAAAACCCATATTTGGGAAATGCAAGCTTGTCACTGAGAAAATTGTGTCATTGAACGAGGGGGATGACCCGTCTACGCTGATAGCTGAGTGGGTAGAGATTCTCCAACCGGGCAGGGTAGACTGGATCAATTTACTTGACAAGTTGAAGGAGCGGAATACTTCTTTGTACTTGAAGGTAGCAGAAATTGCATTGACAGAAGAGTCTTTCCAAACAAATATCCGTGACTATTCTAAGCTTATTAATATCTATGCTGAAGAGAACAAGTTTGATGATGCTGAGAGAATCCTTAAGAAGATGAATGAAAATGGTATTCTACCTGATTCTATAATAGCCCGTGCATTAGTTCATATGTACGCCAGGGCAGGCAATTTTGAACATGCAAAAGAAGCATTTGAAAGCTTGAGAAGCCAGGGTGTCCGTCCAGACATGAAAATCTACAACTCAATGATCATGGCATATGTAAATGCTGGCCAACCTAAGATGGGTGAGGCCCTAATGCGGGAACTGGAGGCAGTAGATATCAAACCCACTTATGAAATGTACATTGCATTGCTCCGATCATTTGCTCAACGTGGTGATGTTGATGGAGCTGTACGAATTTCAACATCTATGCAGTTTGCAGGGTTCCAGCCCAGTATGGAGACTTGTACTTTGCTTGTTGAGGCATATGGGCAGAAAGGTAACTCAGATCTAGCGAGAAATAGCTTTGACTACATGATAAAGCTTGGATACAAGCCTGATGATCGGTGCACAGCTAGCATGATTGCAGCTTATGAGAAGACAAATTTATTGGATAAGGCATTAAATCTTCTTTTGAATCTAGAAGATGATGGGTTTGAGCCTGGGATTGCCACTTACACTGTTCTTGTGGACTGGTTAGCGAAGATGCAGCTTGTTGATGAGGCTGAGCAGCTTTTAGGCAAAATTGCTCTGCAGGGTGAGGCTCCTCCTTTTAAGGTTCAAGTGAGTCTTTGTGATATGTATGCAAGGGCTGGAATTGAGAAAAAGGCCCTTCAAGCTCTGGGTGTTCTTGAGGCTAGGAAGGATCAGTTAAGACCAGATGAGTTTGAGAGAATCATAAGTAGTCTTACTGATGGTGGGTTTGTGCAGGATGCACGAAGAATACTAGGGATCATGGAGGCACAGGGTTTCACAGCATCAGAGCGGCTTAAGATGTCCCTTATTGGACCTCATGCTGCTCGCGGCAAAAGACCAAGTATAAGATAG 2160 0.438 MSWRTLLCRHTIKKLPRLNGTSLSRYCDFCRNSSPVALPTFPSIRSFDHAYGSTTFQSLQSPNFISPFSRYLHSTQLSKLSKSDNDPKVNPEEEEEEDDDGMMNEFLSRFVWVMRKKLTEVYPGSDKQTIDGMLLIIVSKVVSEFGKGGLEHRVDAAVSPSQEFSEDLWRTVWEVSNMVLDDMNKEWKKEKLKGFLQNEEVKEMCRFAGEVGVRGDMLRELRYKWAREKMEEHEFYENLERLRKEAQAEEKGETKSKEVDVFGEKSNVVSLPKRRGKINYKIYGLNLSDPKWAEVADRLHETGEIIWPQEPKPIFGKCKLVTEKIVSLNEGDDPSTLIAEWVEILQPGRVDWINLLDKLKERNTSLYLKVAEIALTEESFQTNIRDYSKLINIYAEENKFDDAERILKKMNENGILPDSIIARALVHMYARAGNFEHAKEAFESLRSQGVRPDMKIYNSMIMAYVNAGQPKMGEALMRELEAVDIKPTYEMYIALLRSFAQRGDVDGAVRISTSMQFAGFQPSMETCTLLVEAYGQKGNSDLARNSFDYMIKLGYKPDDRCTASMIAAYEKTNLLDKALNLLLNLEDDGFEPGIATYTVLVDWLAKMQLVDEAEQLLGKIALQGEAPPFKVQVSLCDMYARAGIEKKALQALGVLEARKDQLRPDEFERIISSLTDGGFVQDARRILGIMEAQGFTASERLKMSLIGPHAARGKRPSIR 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0221 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 523 557 IPR002885 -
Glsi10g0221 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 522 IPR002885 -
Glsi10g0221 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Glsi10g0221 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Glsi10g0221 719 MobiDBLite consensus disorder prediction 78 100 - -
Glsi10g0221 719 Pfam PPR repeat 564 590 IPR002885 -
Glsi10g0221 719 Pfam PPR repeat 596 619 IPR002885 -
Glsi10g0221 719 NCBIfam pentatricopeptide repeat 456 488 IPR002885 -
Glsi10g0221 719 NCBIfam pentatricopeptide repeat 387 419 IPR002885 -
Glsi10g0221 719 NCBIfam pentatricopeptide repeat 424 453 IPR002885 -
Glsi10g0221 719 Pfam Pentatricopeptide repeat domain 511 558 IPR002885 -
Glsi10g0221 719 Gene3D Tetratricopeptide repeat domain 514 676 IPR011990 GO:0005515
Glsi10g0221 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Glsi10g0221 719 Coils Coil 393 413 - -
Glsi10g0221 719 Coils Coil 236 256 - -
Glsi10g0221 719 PANTHER OS07G0661900 PROTEIN 114 705 - -
Glsi10g0221 719 Pfam Pentacotripeptide-repeat region of PRORP 378 506 IPR033443 -
Glsi10g0221 719 Gene3D Tetratricopeptide repeat domain 358 513 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0221 350 712 Glycosyltransferase AT1G05670 24.518 4.83e-33 134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0221 10 1537514 1541017 Glsi10g0221 10 1537514 1541017 ECH