Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0218 ATGCACACAATCGCGACCCCCCCGAATTTGGGGGACGAAGGAAAATGGGATCTGCCATTTGTCTCACGAATTGTTCTGCTTGGTAATTTGGACCATGTCAACGAAGTCACTGAATATCAATCCTTAATCAATTGCTGTTTTAGGCCCATCATAATGCCATTCAGAGATCTTGTTCGTGAGCTCAGGGAAATGCGAGATGGCATGGGTAGAAGAGGGGTAGAGGCCAAGCGTATGCATTGCCGTGGAAAATCTCATATTGCACCGGAATGTTCCTCACCGGCATCTCGGTCATCATCTTCGTTTGTGACTCAGCAGAGCCGCTGGGCTAACTTACCCGCTGAGTTGCTATTAGACATAATTCAAAGGGTGGAAGCTAGTGAAACTTCCTGGCCTGCCAGGAGAGTGGTTGTAGCTTGTGCTTCAGTTTGTCGGTCATGGAGGAAGATAACGGAGGAGGTGGTCAAGACACCAGAACAGTGTGGGTGGCTTACCTTCCCTATATCACTGAAACAGCCCGGTCCAAGAGAGACTCCAATCCAGTGTTTTATTAAGAGAGAAAGGGTGTCTTCGACATATCATTTATATCTTGGTCTGAGCCCTGCTCTCTCTGGGGATATGAGTAAACTGTTGCTGGCAGCAAAGAAGATTAGAAGGGCAACATGTACAGAATTTTTAATATCCTTGGTCGCTGATGATTTCTCTAGAGAAAATAGTACATACGTTGGAAAGCTGAGGTCTAATTTTCTTGGCACCAAGTTCGTGGTCTTGGATACTCAGCTCCCACATGATTCTTCCCTTTCATTAAATTGCAAATTGCAGCAAAGAACCCATTTGAAGCAGGTACTTTCAAGGGCTGCTTCTAACTATAATGTGGCCACCGTATCTTATGAGCTCAATGTTCTCCGCACGAGAGGTCCAAGGAGAATGCGGTGTACCATGCATTCAATTCCCATATCTGCCATCCAAGAAGGGGGCACTGCTCCTACTCCTTTGAAGTTTACTAGTTGCCTTGATGAGCATTTGTCCACCACACCCATTTCGAAAGGAAGAAAGCCAGGAGTTAATCGTGGCTCGACTAGCATTGACAATCCCCCAGAATCAAACCACAGTGCAAGAGACCCACTGATTTTGAAAAATAAAGTTCCTAGATGGCATGAACAACTGCAATGTTGGTGCTTGAATTTCAAGGGACGTGTTACAGTGGCCTCAGTGAAGAACTTCCAGCTCGTAGCAGCTGCGGAATCTCACCAAAATATTTCAGTGGCAGAACAAGATAAAGTGATACTACAATTTGGAAAAATTGGAAAGGACATATTCACCATGGATTACCGTTACCCCCTTTCTGCGTTTCAAGCTTTTGCAATCTGCTTGAGCAGCTTTGACACTAAACCTGCTTGCGAGTGA 1404 0.4544 MHTIATPPNLGDEGKWDLPFVSRIVLLGNLDHVNEVTEYQSLINCCFRPIIMPFRDLVRELREMRDGMGRRGVEAKRMHCRGKSHIAPECSSPASRSSSSFVTQQSRWANLPAELLLDIIQRVEASETSWPARRVVVACASVCRSWRKITEEVVKTPEQCGWLTFPISLKQPGPRETPIQCFIKRERVSSTYHLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVADDFSRENSTYVGKLRSNFLGTKFVVLDTQLPHDSSLSLNCKLQQRTHLKQVLSRAASNYNVATVSYELNVLRTRGPRRMRCTMHSIPISAIQEGGTAPTPLKFTSCLDEHLSTTPISKGRKPGVNRGSTSIDNPPESNHSARDPLILKNKVPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAESHQNISVAEQDKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0218 467 Gene3D Tubby Protein; Chain A 166 467 IPR025659 -
Glsi10g0218 467 Gene3D - 102 155 - -
Glsi10g0218 467 Pfam Tub family 169 462 IPR000007 -
Glsi10g0218 467 Pfam F-box domain 108 153 IPR001810 GO:0005515
Glsi10g0218 467 ProSitePatterns Tub family signature 1. 395 408 IPR018066 -
Glsi10g0218 467 MobiDBLite consensus disorder prediction 342 372 - -
Glsi10g0218 467 ProSitePatterns Tub family signature 2. 452 467 IPR018066 -
Glsi10g0218 467 SUPERFAMILY Tubby C-terminal domain-like 157 467 IPR025659 -
Glsi10g0218 467 MobiDBLite consensus disorder prediction 353 367 - -
Glsi10g0218 467 PANTHER TUBBY-RELATED 84 465 - -
Glsi10g0218 467 PRINTS Tubby superfamily signature 240 264 IPR000007 -
Glsi10g0218 467 PRINTS Tubby superfamily signature 288 315 IPR000007 -
Glsi10g0218 467 PRINTS Tubby superfamily signature 395 411 IPR000007 -
Glsi10g0218 467 PRINTS Tubby superfamily signature 377 394 IPR000007 -
Glsi10g0218 467 PRINTS Tubby superfamily signature 445 467 IPR000007 -
Glsi10g0218 467 PRINTS Tubby superfamily signature 224 240 IPR000007 -
Glsi10g0218 467 PRINTS Tubby superfamily signature 424 443 IPR000007 -
Glsi10g0218 467 SUPERFAMILY F-box domain 104 172 IPR036047 GO:0005515
Glsi10g0218 467 CDD F-box_AtTLP-like 108 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0218 Glsi-ChrGlsi10 1527847 1530996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0218 81 467 TUB Transcription Factor Family AT1G47270 63.077 4.06e-168 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Glsi10g0218 Tub 4.4e-104 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0218 10 1527847 1530996 Glsi10g0218 10 1527847 1530996 ECH