Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0196 ATGGAATCTACCAATCTCCATCAGCTCCAAGACCAACTTCCGCCTGTAATATTTCACACTTTATCGACCCCATCTTGCTATGGGACTGGAAGCAGCCATTCTTGGTCACCAGAAATCTCATTGAATGCCGGTAACTTGAACCAACTCCTCCAAGAAGCTGCTGCCTCCAGATCAAGAGACTCAAAGCAGAAGGATATTGGAGTGCCTCCCCTCAACGATTCTATGATCGAAGTTTTAGGATATCACTGGGCAAGTGATGCAGAAAGCTGCTTGAGCAGTAACCAGTCCACTCATGACTTAGACCAACAGTTTTGCATTAAAAGGGAAGAGATCTCTAATACTTTTCCCAAATTCACAGCCTCAAATAGGGAACACTACCGGTGGTTTCCTCCCACAACCCACATGAAGGATGCTCTTAGCGAGAAGCTTATGCTCAAGCCCTTATCTTCCGGACACTTTTACTCGAGCAGTACTGTAGGTGGTTTGGGAATACCAAGTAGGGGGAACTTTAGCCAGATTTACCCCAGTATAAACATTTCAAAATTAAACCAGTCGTCCCCCGCAGCAAGTTCAACCTCCTTGAATATGAACATGCCCTCTTCATATCTATTAAACTCAGGGGATTCAAGCCTGCCTTCACAAGATGGACGTCAGAGCCTTTCATTACTTCTTGATCATATGCAGCACCCGGTTGACAGGTCGTCCAATAATTCTTGTACATATCCATCACACTTCCCCAATGGCATGGTAGAAATAAAGAGATCCAGCGCTTTAGTGGAGTCAAAGGCTTCTGAATCTCAAACGGCATCAAAGAAATTACGATTGGAATCACGCCCATCATGCCCACCCTTGAAGGTTAGGAAAGAGAAATTAGGAGACAGGATTGCGGCTCTTCAACAGCTGGTGGCTCCTTTTGGCAAGACAGACACAGCATCCGTACTAATGGAGGCTGTTGGATACATCAAATTCCTTCACAGCCAAGTCGAGGTATACTCTTCAATTTCACTTTCTGGTGCTTGTGTTCTGACTTTTGAACTTCTTACCCATCTTCTTAATTCCTTCTTAATAGCATTAGGAAAAGTAATTAAATCTGATGTTTCCTGTTGCTCTATGTTTGCTTTAAGATCCTTCTCACACAAGAAGAAGAAGAATCTCTTATCTTCTCGCCCATCACTCATGCCCTTCATCCCATCGTAG 1197 0.4403 MESTNLHQLQDQLPPVIFHTLSTPSCYGTGSSHSWSPEISLNAGNLNQLLQEAAASRSRDSKQKDIGVPPLNDSMIEVLGYHWASDAESCLSSNQSTHDLDQQFCIKREEISNTFPKFTASNREHYRWFPPTTHMKDALSEKLMLKPLSSGHFYSSSTVGGLGIPSRGNFSQIYPSINISKLNQSSPAASSTSLNMNMPSSYLLNSGDSSLPSQDGRQSLSLLLDHMQHPVDRSSNNSCTYPSHFPNGMVEIKRSSALVESKASESQTASKKLRLESRPSCPPLKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAVGYIKFLHSQVEVYSSISLSGACVLTFELLTHLLNSFLIALGKVIKSDVSCCSMFALRSFSHKKKKNLLSSRPSLMPFIPS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0196 398 Gene3D - 285 337 IPR036638 GO:0046983
Glsi10g0196 398 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983
Glsi10g0196 398 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 124 333 - -
Glsi10g0196 398 CDD bHLH_AtbHLH_like 285 332 IPR045239 -
Glsi10g0196 398 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 285 333 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0196 Glsi-ChrGlsi10 1395877 1402186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0196 22 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 36.915 1.48e-40 147