Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0187 ATGATTGGTTGTAAGTGCAGGCAATTTTGTAAGGACAAGAATCACATCTTGTGCATGTATCATGCGATTAGTTGTGTTTTTGGGTTTGTTCCCGACCAATATAGTGTCTTTGAGAACCAAAATTTTGATGGTTATGGTTCTTGTTTAAGTGGCGGCAACGCATTTCCTGAGGCCCTGGTAGTATTCCCCTGCATTCAATCTCCAGTACTAGCAGAGGGTTCTGAGATCAGCCACACTAGACATTTAATGGATCTTCTTGGAGCAGCTAATGACAGCAATCACCAACCTCAGGGGCTCTCCCTTTCTTTAGGCTCTCGCATGCTTGTTCAACCTGAAGAATACAGACAGCCTTCCTTGAATCCGGGTCTCGTGAGCCCCAGTCACTTCATATCCGGAGAAGAATCACGGGAAGGTTGTAGTCCAGGAGTACTGGATCACTTAACCAGTGCCTATTCTTTCACCAGCACCACTTTTGCTTCGTCTTCTTCCTCATTAAACCGCTCTCTTTCCACATCTTACGCTGCTATAATTGGGAACTCAAGATACTTAAGACCTGTACAATCCCTTCTTGAGGAACTTGTTGATGTTGGTGGAAATGTGGTTGACAGAGTCAATGAAAAATATGTGGAGAAGCTATTTCGTGGGAGTAAAACTGGAGCCCGAAGACTTTCCTGTGAGTTAAAAGCAGAGTTGTGCAATAATGGGATTTTATTGGCTGAGAAACAAGTGAAAATTGCAAAGTTAATTGCTTTGTTAGATGAGGTAGAGGGCAGATTTGAGAAATACTACCATCAAATGGAAGAAGTGATGTCATCCTTTGAAATGATAGCAGGTCTAGGAGCTGCAAAGTGTTATACTGCTTTGGCACTCCAGGCCATGTCTAGGCATTTCTGTAGCTTGAGGGATGCCATAATGTCGCAAATCAATATGGAGAAAAGAAAACTCTTGCAAGATTCACCTAAAATCAGCAGCGAATTATCTCATCTAAGCCTAAGTGACAGAGATGGGAGACAAAATAGAATGTTTCTCCAACAGCTTGGGATGATCCAAAGCCAACGGCAAGTATGGAGACCGATCAGAGGGTTGCCTGAAACTTCTGTAGCAGTCCTTCGTTCTTGGCTTTTTGAACATTTTCTCCACCCTTATCCCAATGATTCTGAAAAGCTTATGCTGGCATCCCAGCTAGGTTTGACTAAAAACCAAGTCTCGAACTGGTTCATAAATGCTCGAGTACGGCTATGGAAACCAATGATTGAAGAGATGTACAAAGAAGAGTTCGGAGATTCTTCGGAAGACTCCAATCCACCCGGTAACAACTGCTTGGCAAGGGAAGACACCACAGACCGCGTGGAGGATTAA 1359 0.4349 MIGCKCRQFCKDKNHILCMYHAISCVFGFVPDQYSVFENQNFDGYGSCLSGGNAFPEALVVFPCIQSPVLAEGSEISHTRHLMDLLGAANDSNHQPQGLSLSLGSRMLVQPEEYRQPSLNPGLVSPSHFISGEESREGCSPGVLDHLTSAYSFTSTTFASSSSSLNRSLSTSYAAIIGNSRYLRPVQSLLEELVDVGGNVVDRVNEKYVEKLFRGSKTGARRLSCELKAELCNNGILLAEKQVKIAKLIALLDEVEGRFEKYYHQMEEVMSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAIMSQINMEKRKLLQDSPKISSELSHLSLSDRDGRQNRMFLQQLGMIQSQRQVWRPIRGLPETSVAVLRSWLFEHFLHPYPNDSEKLMLASQLGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGDSSEDSNPPGNNCLAREDTTDRVED 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0187 452 ProSiteProfiles 'Homeobox' domain profile. 375 416 IPR001356 GO:0003677
Glsi10g0187 452 CDD homeodomain 356 417 IPR001356 GO:0003677
Glsi10g0187 452 SMART HOX_1 356 420 IPR001356 GO:0003677
Glsi10g0187 452 SMART prehox3 171 306 IPR006563 -
Glsi10g0187 452 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 118 433 - -
Glsi10g0187 452 Gene3D - 339 431 - -
Glsi10g0187 452 Coils Coil 238 258 - -
Glsi10g0187 452 Pfam Associated with HOX 177 305 IPR006563 -
Glsi10g0187 452 Pfam Homeobox KN domain 373 412 IPR008422 GO:0003677|GO:0006355
Glsi10g0187 452 MobiDBLite consensus disorder prediction 425 452 - -
Glsi10g0187 452 SUPERFAMILY Homeodomain-like 362 424 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0187 Glsi-ChrGlsi10 1352576 1356221 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0187 48 431 Homeobox Transcription Factor Family AT1G19700 41.832 2.73e-86 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Glsi10g0187 POX 3.2e-36 No_clan