Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0186 ATGATGTACCCAAACCAAGCTTTTTCTTCTGGGTCCTATGCGGAGATGTTATCTGGGAGTTCACTTTTACCTCATGACTACAGTGACTCTGGAGGAGGCCAAAATGAGGTGAAGTTTATCACAGCTATAGGTGACGCAGTGACTATGCAATCTATTAATGAGCATTCGAGTCCTGCAACAGGTGATCCAGCTGGAAACTCTTTTACTGGGGATTCCCATGTTGTTCCAAGGACACAATTGGGACTTGTTGACAATGAGCAGAATAGACAGTGCCAGGGTTTATCTCTTAGCCTTGGGACACTGATGCCTTCTACTGTATCTGTCCCTCCTTTCCATTACCAGTATCCCAGCACTGGCTTTTCATCGCTAATGACTACTTGTCATCCAAACTTAAAGGGTATTGTATCTCTTAAAGATGATGAGGCAAACTTTCATAAAGAGTTGACAAGTGCAGAATGCATGGCATCCGTATCTTCTGGAGGTTTTCATAACACCCTCCAGAAGGAGACTTTGTACAATCCACAATCCTCAGTCTACCAATCTGATCCCTGTCTACACGGATCACCAGGTTTTGCAAACACTGTCCTAAACTCGCAATACCTTAAAGCAGCACAGGAGTTGCTTGATGAAATAGTTAATGTCCGAAAGGCTTTAAAGCAACCTGGATTGGAAAAACAAAAAAATTTCCGTGATATGGGAATAGATGGTTGTAAAGATTCTGAGGAAAAATCTACCAGTCAATCTATGCAGATGTCTTCAGACCCTAATGGTTCAACTGTCAACACTTCGTGTGAATTATCACCCGCAGAAAGGCAGAATTTGTTGGATAAGAAGACAAAACTATTGTCCATGTTAGATGAGGTAGATAAAAGATACCGACAGTACTGCCATCAGATGCAAATCGTGGTGTCATCTTTTGATGTGGTTGCTGGGTGTGGGGCAGCTGAACCATATACTGCACTTGCTTTGCGAACAATTTCTCGCCACTTTCGCTGTTTGCGTGATGCTATTAGCAGCCAAATTCAAGTGACTCAAAGGAATCTTGGGGAACAAGAGGGAATACCTCGTCTACGCTATGTCGATCAGCAGCTTAGACAACAAAAGGCCCTTCAGCAGCTTGGCGTGATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAAGCTCTGTTTCAATACTCCGTGCATGGCTCTTTGAGCATTTCCTTCATCCTTACCCAAAGGATTCAGAGAAAATTATGCTGGCAAGGCAAACAGGCTTGACCAGGAACCAGGTAGCAAACTGGTTCATTAATGCACGGGTGCGTCTTTGGAAGCCAATGGTTGAGGAAATGTACAAAGAAGAGTTTGGTGATACTGAAATGAGCTGCAATCTCTCATCCGAAAGTATTCCCAAGGCTCCGAGAGATAATGTTCAAGTGTCTGATTATAAAGGGGAAGAGTCGCAAGACAACTTAAAAACCTTTGATTGTGTCCGCCAGGGGCAACTTCGTGCCTCTACTACAGAATTTGACACTGGGATTCAAAATAGTGCTCATGGAGAAACAGTCATGCATTCAGGAATGACGAAATTGCAGGGTGATCAAAGGCCTAATAAGAACAATAGCGTTTATTCGAGTGGACCTATACCAACCAATCAGAATAGTGATGGCTGCTTATTGGGCTCTGCTCCGGCCTCATATGATTTGTCAGAGTTTGGTTGTTTTCCTGTGGGTGGCCACGTCTCCCTTGCATTGGAGTTGCGCAATTGTGAAACCAATGAATTTGCCATGTCTGATAATGGCATCAATAAAAGACGCAATCAAACATTAGCTTCTTCCTCAGAGACTGATTTGATAGATTATCATTTCACAGATCAAGGAAAGCAACAAAACAGGTTTGGCAATCCTCATCTGTTGCATGAGTTTGTCGTCTGA 1917 0.4356 MMYPNQAFSSGSYAEMLSGSSLLPHDYSDSGGGQNEVKFITAIGDAVTMQSINEHSSPATGDPAGNSFTGDSHVVPRTQLGLVDNEQNRQCQGLSLSLGTLMPSTVSVPPFHYQYPSTGFSSLMTTCHPNLKGIVSLKDDEANFHKELTSAECMASVSSGGFHNTLQKETLYNPQSSVYQSDPCLHGSPGFANTVLNSQYLKAAQELLDEIVNVRKALKQPGLEKQKNFRDMGIDGCKDSEEKSTSQSMQMSSDPNGSTVNTSCELSPAERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDVVAGCGAAEPYTALALRTISRHFRCLRDAISSQIQVTQRNLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDTEMSCNLSSESIPKAPRDNVQVSDYKGEESQDNLKTFDCVRQGQLRASTTEFDTGIQNSAHGETVMHSGMTKLQGDQRPNKNNSVYSSGPIPTNQNSDGCLLGSAPASYDLSEFGCFPVGGHVSLALELRNCETNEFAMSDNGINKRRNQTLASSSETDLIDYHFTDQGKQQNRFGNPHLLHEFVV 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0186 638 Pfam Associated with HOX 195 338 IPR006563 -
Glsi10g0186 638 SMART HOX_1 380 444 IPR001356 GO:0003677
Glsi10g0186 638 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 138 468 - -
Glsi10g0186 638 SMART prehox3 189 339 IPR006563 -
Glsi10g0186 638 SUPERFAMILY Homeodomain-like 381 447 IPR009057 -
Glsi10g0186 638 Gene3D - 377 454 - -
Glsi10g0186 638 MobiDBLite consensus disorder prediction 230 264 - -
Glsi10g0186 638 Pfam Homeobox KN domain 397 436 IPR008422 GO:0003677|GO:0006355
Glsi10g0186 638 MobiDBLite consensus disorder prediction 243 264 - -
Glsi10g0186 638 ProSiteProfiles 'Homeobox' domain profile. 377 440 IPR001356 GO:0003677
Glsi10g0186 638 CDD homeodomain 380 441 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0186 Glsi-ChrGlsi10 1349625 1352374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0186 92 462 Homeobox Transcription Factor Family AT1G19700 50.000 5.15e-117 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Glsi10g0186 POX 5.3e-51 No_clan