Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0177 ATGGGGTCTCTAATTTCTCCACCTTCGTCAGCTTCATTTTCTAGCATTCGTTTTCGTCAAACTTCCTTGTTCTCCACTCGCATGCTTCCACCAAGGATTAATCAACAGAGATGCAATTGTGAAAATTATAGACAGTATACGGTTAAGTGCAGACTTCTCAGCGTCAATGTGTCTCCTTCCTCAAGTTCAAGCCCTTCTACAGTGATCAAGGAACCTCACAAGTATTTTGATCAGGTAATCATCACAGTTCGTTCAGGTGATGGAGGCCATGGAGCAATACTTAGTATGCCCAACCAGAGAATTAATAAATCACAAGGAAAACAGGAAAAGGAAAAGACAAGGAAGAAAAGCTCCTATAGAAGGGACTTTGATGGATCGCTTATCCTTCCTACGGGTGGGCATGGAGGGGATGTGGTGATTTATGCCGACGAGGGAAAAGATTCATTATTGGAATTCCACAAGAAAAGCCGCTATAATGCAAAGCGTGGTGGCACTGTTGATTCAATGGGTTTTTTGACCTCACAATTGCATGATGGACTTGCTGCCCCAACTTTGCGCATTCCTGTTCCTGTAGGTACAGTTGTAAAACGCAAACGAGGGAAATTACTGGCTGATCTGGCACGACCAGGTGATGAAATTCTTGTTGCGAGGGGTGGACAAGGAGGGATTAGCTTGTTAGAAATGCCACAGCATAAAAGGAAAAAGATGATGGCTTTAACAACAAATGTGATGAGAGATGACACTGATAAGGTTTTAGTTATTGGCCAACCTGGGGAGGAAGTTAGTTTGGAGTTGATCCTTCGAGTTGTTGCTGATGTCGGTCTGGTTGGACTTCCAAATGCTGGGAAATCAACACTTCTGGCAGCCATTACTCTTGCAAAACCTGATATTGCTGATTATCCTTTCACAACATTAATGCCAAACCTTGGACGACTCGGTGGTGACCCCAGCTTGGGGGCAGGGATGTATTCATCTGAAGCTACATTAGCAGATTTGCCTGGTCTTATAGAAGGTGCTCACTTAGGAAAGGGTCTTGGTCGCAATTTCTTGAGGCACCTTAGGAGGACTCGGCTACTGGTCCATGTTGTTGATGCTGCCGCTGAGAACCCTATAAAGGACTATAGAACTGTCAGGGAAGAGTTGCGCATGTATAATCCTGAGTACCTTGAACGACCATACATTGTGGTTTTAAATAAGATTGACCTTCCAGAGGCAAAGGACAGGCTTTCATCATTGACTAAAGAAATACTGAGAATTGGGAGCATCGTTGCACCTTCTGAACTAAAATTGAGTTCTGAAGTTGCTGTTCAATCATTATCCAATGAAGATGACATGAAGGAAAGGAAACTCGAGGATTATCCACCACCCCTCTCTGTTGTGGGAGTTAGTGTTCTAAAGGGCATCAGGATAGATGATATGTTAAAGGAGATAAGGGCAGCATTAAGGAAGTGTATGGATTCGAATGACGAATTGGCTTTGAGTTTGCCACCATGA 1494 0.4364 MGSLISPPSSASFSSIRFRQTSLFSTRMLPPRINQQRCNCENYRQYTVKCRLLSVNVSPSSSSSPSTVIKEPHKYFDQVIITVRSGDGGHGAILSMPNQRINKSQGKQEKEKTRKKSSYRRDFDGSLILPTGGHGGDVVIYADEGKDSLLEFHKKSRYNAKRGGTVDSMGFLTSQLHDGLAAPTLRIPVPVGTVVKRKRGKLLADLARPGDEILVARGGQGGISLLEMPQHKRKKMMALTTNVMRDDTDKVLVIGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGRLGGDPSLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAAENPIKDYRTVREELRMYNPEYLERPYIVVLNKIDLPEAKDRLSSLTKEILRIGSIVAPSELKLSSEVAVQSLSNEDDMKERKLEDYPPPLSVVGVSVLKGIRIDDMLKEIRAALRKCMDSNDELALSLPP 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0177 497 CDD Obg 271 409 IPR031167 GO:0005525
Glsi10g0177 497 ProSiteProfiles Obg domain profile. 73 270 IPR006169 -
Glsi10g0177 497 PRINTS GTP1/OBG GTP-binding protein family signature 329 344 IPR006073 GO:0005525
Glsi10g0177 497 PRINTS GTP1/OBG GTP-binding protein family signature 294 312 IPR006073 GO:0005525
Glsi10g0177 497 PRINTS GTP1/OBG GTP-binding protein family signature 273 293 IPR006073 GO:0005525
Glsi10g0177 497 PRINTS GTP1/OBG GTP-binding protein family signature 346 364 IPR006073 GO:0005525
Glsi10g0177 497 SUPERFAMILY Obg GTP-binding protein N-terminal domain 75 235 IPR036726 -
Glsi10g0177 497 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 271 482 IPR031167 GO:0005525
Glsi10g0177 497 MobiDBLite consensus disorder prediction 104 119 - -
Glsi10g0177 497 Gene3D GTP1/OBG domain 74 269 IPR036726 -
Glsi10g0177 497 Pfam 50S ribosome-binding GTPase 272 399 IPR006073 GO:0005525
Glsi10g0177 497 Gene3D - 270 490 IPR027417 -
Glsi10g0177 497 Pfam GTP1/OBG 131 268 IPR006169 -
Glsi10g0177 497 NCBIfam small GTP-binding protein domain 272 415 IPR005225 GO:0005525
Glsi10g0177 497 MobiDBLite consensus disorder prediction 91 119 - -
Glsi10g0177 497 ProSitePatterns GTP1/OBG family signature. 331 344 IPR006074 GO:0005525
Glsi10g0177 497 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 70 479 IPR045086 GO:0003924|GO:0005525
Glsi10g0177 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 485 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0177 Glsi-ChrGlsi10 1310940 1315532 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0177 10 1310940 1315532 Glsi10g0177 10 1310940 1315532 ECH