Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0171 ATGGAAAATATCCCATTTGTTCCGTTATCCCCTTTTCCTTCTCTTTCGTTTCTTCCAATGGACCGTCACTCTCTCTTGCCTCTTCTCCTTTTCTCCCTCTTATCTGCCGCCGTAGCAACGGCCCAGGTGATTGACGACGACGACCTTCTAATCCGTCAGGTCGTTACGGACGACGAGGATCACTTGCTCAACGCCGAGCACCACTTCTCCAACTTCAAGGCCAAGTTCGGAAAGACCTACGCTACAAGAGAGGAGCACGACTATCGATTCGGTGTCTTCAAGGCTAACTTGCGCCGAGCCAAGCTGCACCAGAATCTAGATCCCTCCGCCGTCCACGGCGTCACAAAATTCTCCGATCTTACTCCCTCCGAATTTCGCCGGCAGTTCCTCGGCCTTAAGCCTCTTCGTCTTCCCGCTGATGCTCACAAGGCTCCGATGCTCCCTACTAGCGATCTCCCTAATGATTTCGATTGGCGTGATCATGGAGCCGTCACTCCCATCAAGGACCAGGGCGCATGTGGATCATGCTGGTCGTTTAGCACTACAGGAGCCCTGGAAGGAGCTCATTTCCTAACGACTGGGGAGCTAGTGAGCCTTAGTGAGCAACAGCTCGTGGATTGCGACCATGATTGTGATCCCGAAGTACATGGAGCATGTGACTCAGGCTGTAATGGCGGGTTGATGACCACTGCATTTGAGTACACACTGAAGGCCGGTGGTGTACAACGAGAAGAGGACTATCCTTACACTGGAACAGACCGTGGCCCCTGCAAGTTTGACAAAAGGAAAATCGCTGCTTCTGTATCTAATTTCAGTGTGATTTCCGTTGATGAAGATCAAATTGCTGCAAATCTGGTCAAGAATGGCCCTCTTGCTGTTGGCATCAACGCAGTTTATATGCAGACATACATCGGCGGCGTCTCATGCCCATTCATCTGTGCAAAGCATTTGGATCATGGAGTTCTTCTAGTGGGTTATGGCTCTGCTGGTTATGCTCCAATCCGACTTAAGGAAAAACCTTACTGGATTATAAAGAATTCATGGGGAGAGAATTGGGGAGAGAACGGATATTACAAGATCTGCAGAGGTCGAAATATATGTGGGGTGGATTCCATGGTTTCAACCGTAGCTGCTATACATACCTCTAGTCAATAA 1155 0.497 MENIPFVPLSPFPSLSFLPMDRHSLLPLLLFSLLSAAVATAQVIDDDDLLIRQVVTDDEDHLLNAEHHFSNFKAKFGKTYATREEHDYRFGVFKANLRRAKLHQNLDPSAVHGVTKFSDLTPSEFRRQFLGLKPLRLPADAHKAPMLPTSDLPNDFDWRDHGAVTPIKDQGACGSCWSFSTTGALEGAHFLTTGELVSLSEQQLVDCDHDCDPEVHGACDSGCNGGLMTTAFEYTLKAGGVQREEDYPYTGTDRGPCKFDKRKIAASVSNFSVISVDEDQIAANLVKNGPLAVGINAVYMQTYIGGVSCPFICAKHLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGENWGENGYYKICRGRNICGVDSMVSTVAAIHTSSQ 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0171 384 Pfam Papain family cysteine protease 152 375 IPR000668 GO:0006508|GO:0008234
Glsi10g0171 384 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 317 327 IPR025660 -
Glsi10g0171 384 CDD Peptidase_C1A 153 376 IPR039417 -
Glsi10g0171 384 FunFam Cysteine protease RD19A 49 377 - -
Glsi10g0171 384 SMART Inhibitor_I29_2 69 125 IPR013201 -
Glsi10g0171 384 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 341 360 IPR025661 -
Glsi10g0171 384 Gene3D Cysteine proteinases 44 377 - -
Glsi10g0171 384 SMART pept_c1 152 377 IPR000668 GO:0006508|GO:0008234
Glsi10g0171 384 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 170 181 IPR000169 -
Glsi10g0171 384 PRINTS Papain cysteine protease (C1) family signature 170 185 IPR000668 GO:0006508|GO:0008234
Glsi10g0171 384 PRINTS Papain cysteine protease (C1) family signature 341 347 IPR000668 GO:0006508|GO:0008234
Glsi10g0171 384 PRINTS Papain cysteine protease (C1) family signature 319 329 IPR000668 GO:0006508|GO:0008234
Glsi10g0171 384 SUPERFAMILY Cysteine proteinases 66 376 IPR038765 -
Glsi10g0171 384 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 64 370 IPR013128 GO:0008234
Glsi10g0171 384 Pfam Cathepsin propeptide inhibitor domain (I29) 69 125 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0171 Glsi-ChrGlsi10 1270231 1272089 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0171 10 1270231 1272089 Glsi08g1996 08 14050023 14064721 CCT