Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0168 ATGGCTGGCTTCTTCTCTCTAGGTGGAAGGGAAGGCCCACAGAACAAACAAGAGGAAGAAAAAGAAGATAACAACAACAGTAATAGCCTATTCTTGTTCCGGAACGAGGAGATCTACAGCAAAGGATTCGAGATATGGCCGCAGTCTTATCACCAACATCAAAACTTGAACAGCTACTACTCGTTTGGAGCGGGTCCTAGTCGCAGAAACTCCTCCAACGACGACGTCGTCTCTGACGAGTCTACGAGATTTGGATTCACGGTCATGAGGTCTGGAGGTCTAGGAAGCGGCATGAACTGTCAGGACTGTGGGAACCAAGCTAAGAAAGACTGTGCACATCTCAGATGCAGGACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTCAAGAGCACTTGGGTCCCCGCAGCCAAACGCCGCGAACGACAGCAACAACTCGCAGCCTTGCAGCAACACCAACAGCAGGAGCATCAACACCAACATCTTAGGGGAGACAATTCAAAACGGTACAGAGAAAATCAGGCTTCGGCTTCTCTTGCCTGCGCTCCATTGCCAATCACCACAACAGGGTTGGAACTGGGACAATTCCCACCCGAGGTGAACTCTCCAGCTGTGTTTCGGTGTGTTAGAGTTAGCGCAGTGGACGCTCCAGATGAGCAGTACGCGTATCAAACCGCTGTCAACATCGGAGGGCACGTCTTCAAGGGAATTCTCTACGATCAAGGCACTGAAGGTCCTTACACCACAGGTGGTGAGAGCTCCTCTGGTGGAGGTGAAGCTCAACAACTTAATCTCATTACCGCCGCAACCACCACTAACACCACAACAACCAGCGGGAACCCGTTTGACCCTTCACTATACCCGGCTCCATTGAATGCCTTCATGGCTGGTACGCAATTCTTCCCTCCCCCAAGATCCTAA 927 0.5146 MAGFFSLGGREGPQNKQEEEKEDNNNSNSLFLFRNEEIYSKGFEIWPQSYHQHQNLNSYYSFGAGPSRRNSSNDDVVSDESTRFGFTVMRSGGLGSGMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQHQQQEHQHQHLRGDNSKRYRENQASASLACAPLPITTTGLELGQFPPEVNSPAVFRCVRVSAVDAPDEQYAYQTAVNIGGHVFKGILYDQGTEGPYTTGGESSSGGGEAQQLNLITAATTTNTTTTSGNPFDPSLYPAPLNAFMAGTQFFPPPRS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0168 308 NCBIfam putative zinc finger domain, LRP1 type 99 141 IPR006510 -
Glsi10g0168 308 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 294 IPR007818 GO:0003700|GO:0006355
Glsi10g0168 308 NCBIfam LRP1 C-terminal domain 197 244 IPR006511 -
Glsi10g0168 308 MobiDBLite consensus disorder prediction 1 27 - -
Glsi10g0168 308 MobiDBLite consensus disorder prediction 147 171 - -
Glsi10g0168 308 Pfam Domain of unknown function (DUF702) 97 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0168 Glsi-ChrGlsi10 1244805 1246178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0168 1 308 C2H2 Transcription Factor Family AT1G75520 49.041 4.81e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Glsi10g0168 DUF702 1.7e-67 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0168 10 1244805 1246178 Glsi08g1999 08 14077603 14078814 CCT