Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0165 ATGGAAACTTTTAATGCAAATGTGGTTATGGAACTCCCAGTCTTACTGTGTGCTCTTATTTGCTCACTGGGGTTGAACTCCATCATTCATATATATGGTGTTCGAATTAAGTCGTCAGTAAATCAGGGAGTGAAGAAGAAAGCTCTCAAGACTTTCCTCACAGTGAGCTACTCAGCTGAGTCGAAACTGCCAACTTTGGATACAGAGTGTAATGATACGCCTGTCAGAGTTGACCGCGATCAAGTGGCAAAAAGAGAGGGGGATCGGTGGACAAGACTAATGAAGATCCAGTGCGACGTCTGTAACAAGGACGAGGCTTCGGTATTCTGCACCGCCGACGAGGCTGCCCTATGTGATGGCTGCGATCATCGTGTCCACCATGCCAACAAACTTGCCTCCAAGCACCAACGCTTTTCTCTTCAGCGCCCTTCTACCAACCAATACCCTGGCTGCGATGTTTGCCTGGAGAGAAGAGCTTTCGTGTTCTGCCAGCAGGACAGAGCAATTCTGTGCAAAGAGTGTGACTTGCAAATTCACTCAGCCAACGAGCACACCAAGAAACATAGTAGATTTCTCCTTACTGGGATTAAGCTCTCTGCTGCTGCTACGCTTTATTCATCATCAGCCTCCGATCCCGTTCTGAGCAATGGTTCCTATTCAATGTCCAATTTCAAGTCGCAGCCTTTAGTAAAGAACCCTGCTTTTGCTTCTTCTGCCATCTCACATCCCACTTTAGTGGCCAAGACTTCACCTTCAACAGCAGCAACACATGCGACAATCAACAAGGTTGGGGAAAACTTGTTAACTAACGAAGGTGCTACTTCCACAAGTAGCATATCTGAGTATTTGATAGAGACTCTTCCGGGCTGGCAGGTTGAGGACTTTCTCGATTCATCTTCTGTTCCGTTTGGTTTCAGTAAGAGTGATGATTTGTTGCCTTCGCTTAATGCTGATATTGAGGGCAACATAGGTTCTCTCTGGCCCGAAAGCATGGGGATCTGGGTTCCTCAAGCACCCTCTCCTATGTATCCCGCTCGAGTAGATCGGCAGATAGGGTTCCAAGAGACAAAAGAGGCGACGGACATCGAAGCCAGCAGATCAAGGTCGAGGGATGATAATTTCATAGTTCCAGAGATTAATCCTCCCTCCGTTGGCTCCAAGAGATCCAGACTTCTGTGCCAGGCTTGTGTTGATCATTTTGTGTATCTCTTTCCCCCCGTGCTTGCAAAATGCAAGCATCATTGTATATATGAACTTTTACAGTTTTCCCCGTTTGATAATGTTTTAGCTGCATGTTAA 1299 0.4657 METFNANVVMELPVLLCALICSLGLNSIIHIYGVRIKSSVNQGVKKKALKTFLTVSYSAESKLPTLDTECNDTPVRVDRDQVAKREGDRWTRLMKIQCDVCNKDEASVFCTADEAALCDGCDHRVHHANKLASKHQRFSLQRPSTNQYPGCDVCLERRAFVFCQQDRAILCKECDLQIHSANEHTKKHSRFLLTGIKLSAAATLYSSSASDPVLSNGSYSMSNFKSQPLVKNPAFASSAISHPTLVAKTSPSTAATHATINKVGENLLTNEGATSTSSISEYLIETLPGWQVEDFLDSSSVPFGFSKSDDLLPSLNADIEGNIGSLWPESMGIWVPQAPSPMYPARVDRQIGFQETKEATDIEASRSRSRDDNFIVPEINPPSVGSKRSRLLCQACVDHFVYLFPPVLAKCKHHCIYELLQFSPFDNVLAAC 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0165 432 ProSiteProfiles Zinc finger B-box type profile. 93 140 IPR000315 GO:0008270
Glsi10g0165 432 ProSiteProfiles Zinc finger B-box type profile. 151 193 IPR000315 GO:0008270
Glsi10g0165 432 CDD Bbox1_BBX-like 151 193 - -
Glsi10g0165 432 SMART bboxneu5 93 140 IPR000315 GO:0008270
Glsi10g0165 432 SMART bboxneu5 146 193 IPR000315 GO:0008270
Glsi10g0165 432 Pfam B-box zinc finger 146 186 IPR000315 GO:0008270
Glsi10g0165 432 FunFam B-box zinc finger protein 21 94 191 - -
Glsi10g0165 432 Gene3D Classic Zinc Finger 94 190 - -
Glsi10g0165 432 CDD Bbox1_BBX-like 98 140 - -
Glsi10g0165 432 PANTHER B-BOX ZINC FINGER PROTEIN 22 94 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0165 Glsi-ChrGlsi10 1215195 1217694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0165 94 388 C2C2-CO-like Transcription Factor Family AT1G75540 44.214 2.17e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi10g0165 zf-B_box 4.5e-05 No_clan