Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0154 ATGGTGCGTATTAATGACGAGTCAACCATCCTATCTATGCGTCCACTTCCTGCAGTGGCCCACAAGGGGCATGCCTGCATAGGTGGTCGAAAGATGAGTGGAAGTGCTTTTAATAAGCTGCTTAGTCGGCTTGCGGTAGAAGGCCATGATCTGTCAAACACAATTGACCTCAAGGACCATTGGGCAGGACATGGTAGAAATCGCAATATCACAATCGAGAATGTGAGCATCCTCGAATCTCAGCGGCATTTCTCAAGTGAATTAAAAGCTTTGTTGCTCTGGACAGCTCGGTTATTGCTATTTGCTACCGCCACCCGAATTGGCCTCCTATATATTCCACCCTCCCTTTTTATTCATCTTCCTCGTGTATTTGCCGCGACGAGATAG 387 0.4729 MVRINDESTILSMRPLPAVAHKGHACIGGRKMSGSAFNKLLSRLAVEGHDLSNTIDLKDHWAGHGRNRNITIENVSILESQRHFSSELKALLLWTARLLLFATATRIGLLYIPPSLFIHLPRVFAATR 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0154 128 PANTHER - 9 72 IPR010409 -
Glsi10g0154 128 Pfam GAGA binding protein-like family 9 72 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0154 Glsi-ChrGlsi10 1145767 1147412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0154 8 73 BBR or BPC Transcription factor family AT5G42520 74.627 7.17e-28 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Glsi10g0154 GAGA_bind 1.1e-28 No_clan