Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0147 ATGCATAGGATGGCTTTCGTCGAAGAAAAGATTAAAGGCGGAGGAGGGCTAATTGTTGGGGGTCAGACTCTAGCTGCTGAGATGAGGATGTTGAAGGAAGTGCAGGATCAGTCTGGGGTCCGAAAGACTATGAATTCCGAGTTATGGCATGCTTGCGCAGGCCCACTTGTAAGCTTGCCTCAGGTGGGGAGTCTTGTGTATTACTTCCCTCAGGGACATAGCGAGCAGGTGGCAGCTTCCACTAGAAGAACAGCAACCACGCAGATTCCAAACTATCCGAATCTTCAATCTCAGTTACTTTGCCAAGTCCAACATGTCGCACTTCATGCAGACAAAGATACAGACGAAATCTATGCTCAAATGAGTCTCCAACCGTTGAATTCTGAAAAAGATGTCTTTCCAATATCTGAGTTTGGACTAAAGCCTAGTAAACATCCGAGTGAATTTTTCTGCAAAACTTTGACCGCTAGTGACACAAGCACGCATGGTGGCTTTTCAGTACCTCGCAGGGCAGCAGAAAAACTCTTTCCTCAGTTGGATTACACGATTCAACCCCCAACTCAAGAACTCGTTGTCCGAGACTTGCATGATAATACCTGGACATTTCGACATATATACCGTGGCCAGCCGAAGAGACATCTTCTCACAACAGGATGGAGTTTGTTTGTAGGCTCAAAAAGGCTTAAAGCAGGTGATGCTGTTCTTTTTATCAGAGATGAGAAATCACAATTGCTGGTTGGTGTTAGGCGTGCTAATCGTCAACAGACTACTTTGCCATCATCTGTGCTCTCTGCTGATAGCATGCATATTGGTGTGCTTGCTGCTGCTGCTCATGCTGCTGCTAACCAGAGCCCATTTACTATTTTCTACAACCCAAGGGCATGCCCTTCAGAATTTGTTATTCCACTGGCTAAATACAGAAAAGCTGTATATGGGACCCAACTCTCAGTTGGCATGAGATTTGGTATGATGTTCGAGACGGAGGAATCCGGTAAGCGCAGATATATGGGTACAATAGTTGGTATCAGTGACTTGGATCCTCTGAGGTGGCCTGGCTCTAAGTGGCGAAATATTCAGGTGGAGTGGGATGAGCCTGGGTGTGGCGATAAGCAGAATAGAGTTAGTTCGTGGGAAATTGAAACTCCTGAAAGTCTTTTTATCTTCCCTTCTTTGACTTCAAGTCTGAAACGACATTCGCAACCTGGATCTTTGGAAAATGAGTGGGGGGCTTTGTTAAGAAGGCCTTTTATACGAGTTCCTGAGAATGGAAATGTGGAGCTCTCAAATTCTATGTCAAATCTATATTTGGAACACCTGATGAAAGTTCTTTTTAAACCTCAACTTGTTAACAATCCTGGAGCCTTTTCATCAGTCATGCCGCAAGAAGCATCTGCTAAGAGAGATCCCTTACAAGAGGTGAACACCACACCGGCAACAGAGAACCAGAAAGCTCATCTTGCATGTTCAGAGGGCATACCGCCAAAAAATTTAGATCATTCTCAATCTTTCCCAGACCAATCTAATTCCTTAAACTTGCATTCCCTGTTAAAATGCGATCAAACTGGAAAATTGCATCCTCTGGCCAAAGTTGATCATCCTCAATCTTTTGGACCAGTTACTGGTAAGACAAAATTAGAATCCGTGGATATAACTGATCATATAATTGACTTCCCTCCCATGGAAGGCTGCAACATTGAAAAAGTGGCTGCAAACCCTGTGAACCCGCTTGGCCTTGCAAGCCAGTCGACATTCCTTAATCAAAACGGTCCTTGGCCCGTGCATCCTCAGTTAGACTCACCAATATCCCATTCGCAACTGGTTGATGTTCCTCAATCTGATTATACCATTCTAAATGCCCTACTTCCTCAGCCAGACGTTGATGAATGGATGTTGTATTCTTCTTGCCAACCTTTTACTGGGACAGGTAGATCAACTGGGCCTTTATCAGCTTTGCAAGAGCAGTCTGCACTTCTCCCTCAAGCAGTTATTGCCCCTTTACCCTCGATGGGCCAAGAAGTGTGGGATCATTATCTCAAAAATTCCAAGTTGTTACCTCAAGCAGACCAGCTAACGCCCATCTCTCAGCAAGGGTTACAAAGCTTTAATTGTATGCCATGTTCAAACGATTTGAGGGATCTGTCAGCTGAGAGCAATAATCAAAGTGGTGTTTACAGTAGTGTCAATATTGATGTCAGTAACAGTGCAAGCACTATGGTTGATCCTTCTACTTCAAGTACTATTTTGGATGAGTTTTGCACATTGAAGGATGGAGATTTTCAGAATCCATCAGACTGCATAGTAGGCAACTTAAGTTCGAGCCAGGATGTCCAGTCTCAGATAACATCAGCAAGTCTTGCAGAGTCTCGTGCTTTTTCTCTGCAAGACATCCCTGATAACTCGGGTGGTGCATCTTCAAGCCATGTTGATTTTGATGAAAGCAGCTTTCTGCAGAATAACTCATGGCAGCAAGTAGCTGCACCCATGCGAACTTACACCAAGGTTCAAAAGGCGGGATCAGTAGGAAGATCAATTGATGTGACTACTTTTAAGAACTATGAGGAACTGATCTCCGCAATTGAATGCATGTTTGGACTTGAGGGTCTGCTCAATGACACTAGAGGTTCAGGATGGAAATTGGTATATGTAGATTACGAGAACGATGTTCTACTTGTCGGGGACGATCCTTGGGAGGAATTTGTGGGCTGTGTCCGCTGCATCAGAATTTTATCGCCTTCGGAAGTTCAACAGATGAGTGAAGAGGGAATGAAGCTTCTCAACAGTGCTGCGGTGCAAGGGATGAATGGTTCCATGCGACGAGAGAAGTCAAATAGGACATGCTCATATCCTGCTGTTAAAGTTACATTGCACATTGAGAAACATATGACTGAATCCATTGCAGTCAAAGAAAGGCAAATTCCAACGATAAATTCTAGAGACTTAAAGCAACATTATTAG 2955 0.4406 MHRMAFVEEKIKGGGGLIVGGQTLAAEMRMLKEVQDQSGVRKTMNSELWHACAGPLVSLPQVGSLVYYFPQGHSEQVAASTRRTATTQIPNYPNLQSQLLCQVQHVALHADKDTDEIYAQMSLQPLNSEKDVFPISEFGLKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPQLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDAVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANQSPFTIFYNPRACPSEFVIPLAKYRKAVYGTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSSWEIETPESLFIFPSLTSSLKRHSQPGSLENEWGALLRRPFIRVPENGNVELSNSMSNLYLEHLMKVLFKPQLVNNPGAFSSVMPQEASAKRDPLQEVNTTPATENQKAHLACSEGIPPKNLDHSQSFPDQSNSLNLHSLLKCDQTGKLHPLAKVDHPQSFGPVTGKTKLESVDITDHIIDFPPMEGCNIEKVAANPVNPLGLASQSTFLNQNGPWPVHPQLDSPISHSQLVDVPQSDYTILNALLPQPDVDEWMLYSSCQPFTGTGRSTGPLSALQEQSALLPQAVIAPLPSMGQEVWDHYLKNSKLLPQADQLTPISQQGLQSFNCMPCSNDLRDLSAESNNQSGVYSSVNIDVSNSASTMVDPSTSSTILDEFCTLKDGDFQNPSDCIVGNLSSSQDVQSQITSASLAESRAFSLQDIPDNSGGASSSHVDFDESSFLQNNSWQQVAAPMRTYTKVQKAGSVGRSIDVTTFKNYEELISAIECMFGLEGLLNDTRGSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSAAVQGMNGSMRREKSNRTCSYPAVKVTLHIEKHMTESIAVKERQIPTINSRDLKQHY 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0147 984 ProSiteProfiles PB1 domain profile. 829 913 IPR000270 GO:0005515
Glsi10g0147 984 SMART B3_2 150 252 IPR003340 GO:0003677
Glsi10g0147 984 CDD B3_DNA 149 250 IPR003340 GO:0003677
Glsi10g0147 984 Pfam AUX/IAA family 825 916 IPR033389 -
Glsi10g0147 984 SUPERFAMILY DNA-binding pseudobarrel domain 140 279 IPR015300 -
Glsi10g0147 984 FunFam Auxin response factor 148 252 - -
Glsi10g0147 984 Pfam Auxin response factor 276 359 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi10g0147 984 Gene3D - 825 918 - -
Glsi10g0147 984 SUPERFAMILY CAD & PB1 domains 830 908 - -
Glsi10g0147 984 FunFam Auxin response factor 824 918 - -
Glsi10g0147 984 Gene3D - 148 251 IPR015300 -
Glsi10g0147 984 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 41 919 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi10g0147 984 MobiDBLite consensus disorder prediction 477 508 - -
Glsi10g0147 984 FunFam Auxin response factor 314 386 - -
Glsi10g0147 984 Gene3D - 314 386 - -
Glsi10g0147 984 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677
Glsi10g0147 984 Pfam B3 DNA binding domain 150 251 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0147 Glsi-ChrGlsi10 1081329 1088811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0147 23 937 B3 DNA Binding Superfamily AT1G19850 59.382 0.0 997
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi10g0147 AUX_IAA 2.9e-11 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0147 10 1081329 1088811 Glsi10g0147 10 1081329 1088811 ECH