Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0138 ATGGCTCTCTTAACTTTCTTGCCCGAGCAGTCAGGCTCAGACCCCAAAGCACAAGTTTCCAAACGCAAGCAAAAACAACAGCAACAGAAGCGGAAACCACCATCTTCATGGGACCAAATCAAGAACCTCCTCACCTGCAATCAGATCCAAGGCTCCAGAGTGCACGACCCCTCCAAAAACCCCACCCCGCTTGCCTACTCCAAACTAGGCTCTTCTTGCAGCTCCATTTGTAGCTTCAAAGACGTTGTTCACGGGAACACACGAGTTGTTCACAGAGCTGATAACTCGTCCCCGGAGAGTAGCGCTCTGGGCCAGGAAACTGGGCTACTGAGCCGGAAGCTTCCCAACGGGAAATCCAACGGCGGAGCATCGTACACGTCGTCTTCCAGGGGGTTGCAATTCAGGAAACTCTCCGGGTGTTATGAGTGTCATATGATAGTTGATCCTGCCAGGCTCACAATTCCCAGAAGTACTCTATGTTCCTGCTCAAAGTGTGGAGAGGTCTTCCCTAAAATGGAAAGTTTGGAGCTTCATCAAGCTATTCGTCATGCCGTTTCGGAGCTGGGCCCGGAGGATTCTGGTCGAAATATTGTGGAGATAATCTTCAAATCAAGCTGGCTGAAGAAGGGAAACCCCATCTGCGAGATCGAACGGATATTAAAAGTCCACAATACCCAGCGCACCATCCAACGCTTCGAGGAGTGCCGAGACGCCGTCAAGAACCGTGCTCCCCACAGCGGCAAGAAGAACCCCAGATGCGCCGCGGATGGCAACGAGCTATTACGGTTCCACTGCTGCAGCCTATCATGCTCACTGGGTGCACGTGGCTCCTCCAGCTTGTGCGGTTCCATACCTGGCTGCGGTGTTTGCACGACCATCAGGCACGGATTTCAGGGCAAGTCAGGGGGTGGTGAGGGACAGGGTGGAGTGCGGACCACAGCCAGCAGCGGCAGGGCCCACGACTCCTTGCAATGCAGTGACAGTAGAAGGGCTATGCTGGTGTGCCGTGTGATTGCGGGGAGGGTGAAGCGGTTGGCTGAAGAGGCGCCGTTGGAAGAGGAAACTGTGTCGGCTGGCTCCTATGACTCTGTCACCGGGTACGCCGGGATGTACTCGAATCTGGAAGAGCTGGTTGTGTTCAATCCAAGGGCTATCCTTCCTTGTTTCGTAGTGGTTTACAAAGTTGTTGCATGTTGA 1197 0.5397 MALLTFLPEQSGSDPKAQVSKRKQKQQQQKRKPPSSWDQIKNLLTCNQIQGSRVHDPSKNPTPLAYSKLGSSCSSICSFKDVVHGNTRVVHRADNSSPESSALGQETGLLSRKLPNGKSNGGASYTSSSRGLQFRKLSGCYECHMIVDPARLTIPRSTLCSCSKCGEVFPKMESLELHQAIRHAVSELGPEDSGRNIVEIIFKSSWLKKGNPICEIERILKVHNTQRTIQRFEECRDAVKNRAPHSGKKNPRCAADGNELLRFHCCSLSCSLGARGSSSLCGSIPGCGVCTTIRHGFQGKSGGGEGQGGVRTTASSGRAHDSLQCSDSRRAMLVCRVIAGRVKRLAEEAPLEEETVSAGSYDSVTGYAGMYSNLEELVVFNPRAILPCFVVVYKVVAC 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0138 398 MobiDBLite consensus disorder prediction 1 37 - -
Glsi10g0138 398 ProSitePatterns Zinc finger C2H2 type domain signature. 160 183 IPR013087 -
Glsi10g0138 398 Gene3D - 184 396 - -
Glsi10g0138 398 MobiDBLite consensus disorder prediction 109 128 - -
Glsi10g0138 398 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 188 IPR013087 -
Glsi10g0138 398 FunFam C2H2-like zinc finger protein 184 394 - -
Glsi10g0138 398 SUPERFAMILY ADP-ribosylation 185 394 - -
Glsi10g0138 398 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 35 393 - -
Glsi10g0138 398 MobiDBLite consensus disorder prediction 300 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0138 Glsi-ChrGlsi10 1005829 1008083 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0138 1 396 C2H2 Transcription Factor Family AT1G75710 60.823 6.44e-175 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi10g0138 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0138 10 1005829 1008083 Glsi10g0138 10 1005829 1008083 ECH