Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0121 ATGACTCTTGAAGATTTCTTTACCTTGACTGAGATGAAAGATGGGCTTACGGCCCCTTCTCGAGTACAGGAGCTGGTCTCTGTAATGCAGAAGGAGAAAGAAAGTGTGGTTAAGAATGTTGGTGATGCAACAAGGCAGTGGGCTGCTGTTGCAAGCACTATTGCTGCCACAGAGGACAAAGATTGTCTCGATCTCTTTATTCAGTTAGATGGACTTTGGTTTATTAGTAGATGGTTAAAGGATGCTCAAAATTTTGGTGTTGACACAAATGATGGCTTCATTGAGGAGTCAGTTACCGCACTGTTACGAGCAATTGAAAAGTTGCATATAGATAGTGAAAAATCAATGTCATCTGGAATTTGGGTAACTGTTAGAAATCTTCTCGCACATCATAGCTCTAGGGTTCAGGGTAGAGCAAGAGTATTATTTGACAGCTGGAAGTTGGGTGGAAGTGGTGATGCGGATTTTCATGATATGGATCTTGTTAGAGTCAATGATGAGAGTGAAAAAATTGTCAGGGAGGAAGGTCAGCCATCTGCTGTGAATGAAGCTGGCAATGATAAGGATCAGGCATCTGGAATTATAGAAGGCGAGAAATCTCCATTAAGAAGCACAGATATGCTACTAGCAGAAAGGGTTGTCAGTGTACAGATTCAGAGTTCTAACAATCAGCTCCATTCTTCAGTAAGTTTGGATTGTGAAGACGACAAACTGAGATCACCAGAGCATGCTGCTAATGTTTCAACTTCTGTTCAAGAAGTTGCTCCCATTGCGCCCATTAAAGAAGGATTACCTTTTTGCACTGTAGATGAGACCACTCCAGATGGGACTTGTAGCTTTCCTGTTCAAAAGCAAGACAATTTTGAAGGGCAATCAGATGTTTTGAAGTTAAATTACTTATCCGAAAAGGAGAAGCTGGAGCAAAACATTAATGAACCTCCTGAAAAAGTAGTAGTAGCAGAGAACTCTTTGGCATCCACCAAGCCCGAGCTGGGCCCTGTTTTGATGGGTGCTACTGAGGCAAAGCCACTGGAATCAGTGAATGAACCTGTACAACATAACGTTGAAAACGATGAGGATGCTGTCTGTCATAAAATAACTGCTTCTGGTAGTGTGAGGACAGTCACATCTGATAGAAAGAGTGGGGTGGATGATATCAGAGCTATGAATTCTAGCAGTCCACAACTTTTGAAGACTGCAGAAAAGGATGATGACTGTTGTTCTAATCCTTTGCACGACTCATCAATCAGTGGTAGTAACTCAGGAAAGCCAGAGGTGATAGAGACATCTTCTTCCAAAGCAGATTTTGTCAGAGCAGTAAAGGAAGTTAAGGGGCATGTTAGTAATGAAGGCGAGGATACCTCAAATGGTTCTGATTCTATTAAACCAGGGAGAGGTCCCAGAAGCTCAAATATGATTGACAAGAAGAATTCTGAAATTGAACTTGAGTATGGCATTGTTGATGCTTTAGAAGTTGCTCGACAAGTTGCTCAGGAAGTTAGAAGAGAAGTCTGCAGCTCTTCTTCAGAGAAAATGTCAGAAGGTGGAAACCAGCAACCAGGCAGTCCAGATTCCATAGGAAGAGAGGATGCACTCACTTGTATCCCACCCAAGGAGGTTCCATCCAGGCAAAACCACTCTGCTGAGGCATATACTGAGGATGAGGGACATGCAAGTACTTCAGACAATATTGAGGCTGAACCAGAACGCATACCTGCCACAGAGTCCTCACAGGTGACCGAAGCAGCTGAAGATCCAGGAGGTAGTTCAGAGAAAATTTTATGTGCTTTTGATCTCAATGAAGAAGTTGTTTCTGATGATATGGATGTTTCTGTAAATGCTATGTCTACGCCAATACCTGTTGTCTCTGCTTCAAAGCCTGCAGCAACTCCTGACTTGCCTGCAGCCCCTTTGCAGTTTGAGGGGACACTTGGATGGAAAGGATCTGCTGCCACTAGTGCCTTTCGTCCTGCATCGCCTCGTAAAAATTCTGATAGTGGCAAAATTCTTTCTGTTGGTGGAAACTCTGATGTTTCCAAGCAAAGGCAGGATTGGCTTAATATAGATCTAAATGTTACTGAGGGTGAAGATGGATCGGGAAAACAAATTGCTGAATCATCTAGCCTTCCTTCTGTGCAATCATCAGTGAACTTTAGTCCTAAAAGATTGAGCAGACTTGAATTGGATTTGAACAGTATTGGTGATGATGGTGATGGCCAACTTTCAGATCAGAGGATGGAGGGACAGTTATTTAACGGCAGAAATGGCCATTGGAGCCCATCACCTGCATCAGCATCATCATCAATGCAGCCTTCTGTTAGAAACTTTGATTTGAATGACCGGCCATATCTTCAAACTGATTTGGTGGAACAAGGGCCCAGTAAGTCTTCTCATAGTATTGATGCATATGGGGGGTCTAGATCAGATGATCCTGTTATCTCCATCTTCGGTACCAAGGTGGAAGTTGGTAGAAGCGAATTTGTTCCTCATCCTGTGTCTTTGCCAAATGGTAAGGCTATCGATCCTGCAGTGGATCTTACAATGTCAAGCACAGGTGGCTTTTTTGGGATGGGACCCACAGCATCCTACAATCATTCTCATGTTTTTGGGTATAATGGACTGACATCAGCATCTGCCTTGCCTTTTTCATCCGCCATATACGGGTCAGGTGGGACAATTCCGTACACGGTGGACTCAAGAGGAGCTCCGGTTGTGCCTCAAGTTGTGGGATCTTCCTCAACATTCCTGTCATCTTACTCCCAGCCTCCATTCATCATGAGCATGACCAGTGCACAACTTGGTTTAAATGGAGTTGGACCTTCACGTCCTAACTTTGACCTAAATTCTGGCTTTGTGATTGAGGGTGGGAATAGAGATACATTGACTGCAAGGCAATTTTTCTTTCCCGGTCAGAGCAGGGCTATAGAAGAGCATGTAAGGACCATTCCACAACCCTCAAGTTCTGGGGTTGGTGTGAAAAGAAAGGAACCGGACAGTGGGTGGGAAAGCTACCCTATGAGCCACAAACATTCGCAACCTCCATGGAAGTAG 3051 0.4385 MTLEDFFTLTEMKDGLTAPSRVQELVSVMQKEKESVVKNVGDATRQWAAVASTIAATEDKDCLDLFIQLDGLWFISRWLKDAQNFGVDTNDGFIEESVTALLRAIEKLHIDSEKSMSSGIWVTVRNLLAHHSSRVQGRARVLFDSWKLGGSGDADFHDMDLVRVNDESEKIVREEGQPSAVNEAGNDKDQASGIIEGEKSPLRSTDMLLAERVVSVQIQSSNNQLHSSVSLDCEDDKLRSPEHAANVSTSVQEVAPIAPIKEGLPFCTVDETTPDGTCSFPVQKQDNFEGQSDVLKLNYLSEKEKLEQNINEPPEKVVVAENSLASTKPELGPVLMGATEAKPLESVNEPVQHNVENDEDAVCHKITASGSVRTVTSDRKSGVDDIRAMNSSSPQLLKTAEKDDDCCSNPLHDSSISGSNSGKPEVIETSSSKADFVRAVKEVKGHVSNEGEDTSNGSDSIKPGRGPRSSNMIDKKNSEIELEYGIVDALEVARQVAQEVRREVCSSSSEKMSEGGNQQPGSPDSIGREDALTCIPPKEVPSRQNHSAEAYTEDEGHASTSDNIEAEPERIPATESSQVTEAAEDPGGSSEKILCAFDLNEEVVSDDMDVSVNAMSTPIPVVSASKPAATPDLPAAPLQFEGTLGWKGSAATSAFRPASPRKNSDSGKILSVGGNSDVSKQRQDWLNIDLNVTEGEDGSGKQIAESSSLPSVQSSVNFSPKRLSRLELDLNSIGDDGDGQLSDQRMEGQLFNGRNGHWSPSPASASSSMQPSVRNFDLNDRPYLQTDLVEQGPSKSSHSIDAYGGSRSDDPVISIFGTKVEVGRSEFVPHPVSLPNGKAIDPAVDLTMSSTGGFFGMGPTASYNHSHVFGYNGLTSASALPFSSAIYGSGGTIPYTVDSRGAPVVPQVVGSSSTFLSSYSQPPFIMSMTSAQLGLNGVGPSRPNFDLNSGFVIEGGNRDTLTARQFFFPGQSRAIEEHVRTIPQPSSSGVGVKRKEPDSGWESYPMSHKHSQPPWK 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0121 1016 MobiDBLite consensus disorder prediction 410 428 - -
Glsi10g0121 1016 MobiDBLite consensus disorder prediction 750 777 - -
Glsi10g0121 1016 MobiDBLite consensus disorder prediction 548 564 - -
Glsi10g0121 1016 MobiDBLite consensus disorder prediction 378 433 - -
Glsi10g0121 1016 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 1016 - -
Glsi10g0121 1016 MobiDBLite consensus disorder prediction 445 474 - -
Glsi10g0121 1016 MobiDBLite consensus disorder prediction 504 590 - -
Glsi10g0121 1016 MobiDBLite consensus disorder prediction 450 465 - -
Glsi10g0121 1016 MobiDBLite consensus disorder prediction 509 524 - -
Glsi10g0121 1016 Pfam TFIIS helical bundle-like domain 101 147 IPR017923 -
Glsi10g0121 1016 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 149 IPR035441 -
Glsi10g0121 1016 MobiDBLite consensus disorder prediction 656 676 - -
Glsi10g0121 1016 MobiDBLite consensus disorder prediction 692 716 - -
Glsi10g0121 1016 MobiDBLite consensus disorder prediction 750 775 - -
Glsi10g0121 1016 MobiDBLite consensus disorder prediction 981 1016 - -
Glsi10g0121 1016 MobiDBLite consensus disorder prediction 651 676 - -
Glsi10g0121 1016 MobiDBLite consensus disorder prediction 700 716 - -
Glsi10g0121 1016 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 147 IPR035441 -
Glsi10g0121 1016 ProSiteProfiles TFIIS N-terminal domain profile. 73 153 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0121 Glsi-ChrGlsi10 913045 916095 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Glsi10g0121 Med26 3.9e-05 No_clan