Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0109 ATGATTACCACAACTGACTCTTCCTCTAACCATCACTCGCCGACTAGTGCTGGGGACACTAATAGCCCCAAGTTCCCGCGAAAAAACCTGTCGTCTCCCTGGGCTCAAGTTGTCCGAGGTGGTGAGCCAGAATTAATCTCCGTCATTCACCAATCGCCTCCGTCCTCTTCCTCTTCGTCGTTGCTCACTAACTCTGTACCTGACCAATCACTATTTTCTGATTCCTCTTCTAAGGCGGCTCCTGCTTCGCCGCCGCTGGATAATTCTAATATTGCCGTAGCTGAGGGCTCCGATGTTAATGACGGCAATGTGGGTCGTCCTAAGAGGACGGCATGGAACAAGCTCTCTAACGGTGTTGTGGAGGCTGGTCCTGTAATGGGTGCTATCTCTTGGCCTGCTTTATCTGAAACCACCAAGACTTCGACTAAATCGTCAGCTGATTCGTCCTCGAAGAATGCCATGGATGGATCACTCTCCATTTCTCAGCAGGGGTCTGGCACTTCACACTCCCCTCAGAAACAAGCTACTAGTAATGCAAAGCCTAATTCTGCAACAAACTATACTGTGCATCATAAACAAAGATCGATGAAGCGTGGAGTTGGCAACAGCATTGGGGCTGGTCATGCACAGAGCAGCTTCTCCAACCCTCCCCCACCTCCACCACCACCTCCCTTTCCTGTATTTCAGATTCCTCCAAGTAGATATGGTAATGTTATGCCAGGGATTCCAGATCCTTCTCCGAGAGAAATCCCTTACAGGAACAAGAACTGGGATACGAGACCACAAGTTGGGGGTTTTGTGCCTGCAGTGAATGATCATTGGAATTCCTCTCGTAGAGGCAATTTTGGGCACCATCAACGCGGAGATGGACCTTATCATAATAGTCATGGGGGCAGGCGTGATCAGGAACGTGGAAATTATGCAAATACTAGAGATGTTCACGTTCCCCAACAAAGGATGCCTCCTAGGGGATTAGTGAGGCACCTGCCTCCAAATAATCCTGCATTCGTCACCCCTCAGGCCGTGGGACCATTTGCAAACCCCGCGGGTTTTCCCGAATTCTATTATTTCCCGACGTTACCACTGGAACCCTTCAGGGGCATGCCACTCTTGACTCATGGCCCTCCTCCTGCGATGTTATTCCCTGTTGCAGAACCTCCTCTGACTAATATGATAGTGAACCAAATTGATTACTACTTTAGTGATGCTAATCTAGTGAAAGATGAGTTTTTAAGATCCAACATGGATGAACAGGGTTGGGTTCCTATTACTTTGATAGCAAGCTTCCCTCGAGTTAAAAACTTGACAAGCAACATTCAGCTGATACTGGATTCATTGAGAACTTCCACCATTGTTGAAGTACAGGGTGACAAGTTGCGGAGGCGTAATGAATGGACAAAGTGGCTTTCCTCATCTCAGCTTCGTGCTGATTCTGGTTCATTATCTCCTGCTGGATCAAGTTACAATAACCTAGCTGATTTTCAAAAGATCACTCTGGTAGAAGCAGCTACAGATAAAGGTAATTCAGACCCTTCCTCAGATGCACTTCCCGGAAGATGTCCATCAGATTTTTCCAGTCAATCTCAACTCCCAAATGGTGATACCACAGGGAACACCAATTAA 1623 0.475 MITTTDSSSNHHSPTSAGDTNSPKFPRKNLSSPWAQVVRGGEPELISVIHQSPPSSSSSSLLTNSVPDQSLFSDSSSKAAPASPPLDNSNIAVAEGSDVNDGNVGRPKRTAWNKLSNGVVEAGPVMGAISWPALSETTKTSTKSSADSSSKNAMDGSLSISQQGSGTSHSPQKQATSNAKPNSATNYTVHHKQRSMKRGVGNSIGAGHAQSSFSNPPPPPPPPPFPVFQIPPSRYGNVMPGIPDPSPREIPYRNKNWDTRPQVGGFVPAVNDHWNSSRRGNFGHHQRGDGPYHNSHGGRRDQERGNYANTRDVHVPQQRMPPRGLVRHLPPNNPAFVTPQAVGPFANPAGFPEFYYFPTLPLEPFRGMPLLTHGPPPAMLFPVAEPPLTNMIVNQIDYYFSDANLVKDEFLRSNMDEQGWVPITLIASFPRVKNLTSNIQLILDSLRTSTIVEVQGDKLRRRNEWTKWLSSSQLRADSGSLSPAGSSYNNLADFQKITLVEAATDKGNSDPSSDALPGRCPSDFSSQSQLPNGDTTGNTN 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0109 540 MobiDBLite consensus disorder prediction 272 304 - -
Glsi10g0109 540 Gene3D - 382 472 IPR036388 -
Glsi10g0109 540 MobiDBLite consensus disorder prediction 278 304 - -
Glsi10g0109 540 ProSiteProfiles La-type HTH domain profile. 382 471 IPR006630 -
Glsi10g0109 540 SMART la 386 464 IPR006630 -
Glsi10g0109 540 FunFam la-related protein 1B isoform X2 378 468 - -
Glsi10g0109 540 MobiDBLite consensus disorder prediction 1 29 - -
Glsi10g0109 540 MobiDBLite consensus disorder prediction 502 540 - -
Glsi10g0109 540 MobiDBLite consensus disorder prediction 135 256 - -
Glsi10g0109 540 MobiDBLite consensus disorder prediction 1 110 - -
Glsi10g0109 540 MobiDBLite consensus disorder prediction 519 540 - -
Glsi10g0109 540 MobiDBLite consensus disorder prediction 135 190 - -
Glsi10g0109 540 MobiDBLite consensus disorder prediction 49 84 - -
Glsi10g0109 540 CDD LAM 390 462 - -
Glsi10g0109 540 MobiDBLite consensus disorder prediction 213 230 - -
Glsi10g0109 540 SUPERFAMILY "Winged helix" DNA-binding domain 380 469 IPR036390 -
Glsi10g0109 540 PANTHER LUPUS LA PROTEIN-RELATED 128 473 IPR045180 -
Glsi10g0109 540 Pfam La domain 392 447 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0109 Glsi-ChrGlsi10 806973 811997 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0109 10 806973 811997 Glsi10g0109 10 806973 811997 ECH