Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0102 ATGCTTGATTCCGTTCTTTTGGCACTTTTCCTCCCCTGCCTTGGCATGACTTCCCTCTTCATAGTCTACATATGCCTTCTGTGGTACGCCACTTCTCATCAGCCCGATGTCAGGCTACCGCAGAAGCCCGTCTCCGAGAAGGGCTTGTCGGCTTCGGAGCTCGACAAGTTGCCAAGAATCACGGGAAAAGAACTGGCCATTGGAACTGAATGCGCGGTATGCCTTGACGAGATCGAGAACGAGCAACCGGCTAGACTGGTTCCTGGTTGCAATCACGGATTCCATGTGGAATGCGCCGACACTTGGCTTTCCAAGCACCCGCTATGTCCGGTTTGTAGAGGCAAGCTGGATCCCGAGTTTTTCAGTTCTTCTGAAAGTCCGTGTTGA 387 0.5271 MLDSVLLALFLPCLGMTSLFIVYICLLWYATSHQPDVRLPQKPVSEKGLSASELDKLPRITGKELAIGTECAVCLDEIENEQPARLVPGCNHGFHVECADTWLSKHPLCPVCRGKLDPEFFSSSESPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0102 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Glsi10g0102 128 Pfam Ring finger domain 70 113 IPR001841 -
Glsi10g0102 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 123 - -
Glsi10g0102 128 SMART ring_2 71 112 IPR001841 -
Glsi10g0102 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 119 IPR013083 -
Glsi10g0102 128 SUPERFAMILY RING/U-box 70 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0102 Glsi-ChrGlsi10 762511 762897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0102 1 128 C3H Transcription Factor Family AT5G42200 53.285 1.22e-45 144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0102 10 762511 762897 Glsi08g2070 08 14516475 14516861 CCT
Glsi10g0102 10 762511 762897 Glsi10g0102 10 762511 762897 ECH