Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0098 ATGAAACCGGTATCTCTGTGTCAGCAAAGCGTACAGGAGCAAAAAGTGAAGAATGATACTGAGGAGCATCGTGAGGAGCAAAGCAAAGCAAAGCATAAGTTAAAAGGAGCAGAGCCTAATGGTTCCACCACTCCAATACTCCCAACATGGTTGAGTCCTGCCCCTTCTACTTACTCGTCCTACAACGCTTCCTCATCTTCGTCTCAGCTTGGACCTATTTTAGGTAAACCATATATTGACATAAACGGACTTTATACTTTTGAGAAAGAGGTGGGAAGGGGCAAATTTGGGATTACCTATCTTTGTACAGAGAAGGCCACCCGACGCAACTACGCTTGTAAGTGCATACCTAGGCGAAAGCTAACTAGCAAGAAGGGAATTGAGGATGTTAAGAGGGAAATTATGATCCTACAGCACCTAACGGGGCAGCCCAATATAGTGCAATTTAAGGGTGCTTATGAGGATCGCCAGAATGTGCATTTGGTAATGGAGTTGTGCTCCGGTGGTGAGCTTTTTGATCGGATTATAGCCAAGGGGAGTTACTCGGAAGGCGAAGCTGCCCTTATATTCAGGCAAATTGTGAACGTGGTTCATGCTTGTCATTTTATGGGGGTGATGCATAGGGATTTGAAGCCAGAGAATTTCTTGCTGGCTACTAGGGATGAGAATTCACCATTGAAAGCCACGGATTTTGGACTTTCTGTCTTCATTGAGCAAGGTAAAGAGTATAAGGAATTTGTGGGAAGCGCATACTACGTAGCCCCAGAGGTAATAAAACGGAATTATGGAAAGGAGATAGATGTGTGGAGTGCAGGAGTCATTTTATACATACTCCTAAGTGGGGTGCCTCCATTTTGGGCTGAGAACGATAAAGGCATATTTGAGGCTATTGTGGAAGGCAAAGTTGATCTTCAAAGCCCACCGTGGCCTTCTATTTCAGCTGCTGCGAAGGATCTGATCAGTAAAATGTTGGCATATGATCCTAAGAAACGCATTACAGCTGCTGATGCCCTTGAACACCAATGGATGAAGGAAGGTGGTGAAGCATCTGACAAGCCTATAGACAGTGCTGTTTTAATTAGGATGAAACAGTTCAGAGCAATGAACAAGATGAAGAAACTTGCCCTAAAGGTGATAGCAGAAAACCTGTCAGAGGAAGAAATTAAGGGCTTGAAACAAATGTTCAACAATATGGATACGGATTCCAGTGGCACAATCACATTTGAGGAGCTCAAAGCTGGATTGGCCAAATTGGGATCTAAACTTACCGAATCTGAAATACGGCAGCTGATGGATGCTGCTGATGTTGACAGGAATGGGACTATTGATTATTATGAATTCATCACTGCCACAATGCATCGGCATAGACTTGAGAAGGAAGAGAATTTGTACAAGGCTTTCCAATACTTTGACAAAGATAACAGCGGTTTTATAACAAGAGATGAACTTAGACAAGCTTTGGCTGAATATGGAATGGGAGATGAAGCTACTATAGATGAAGTCATTGACGACGTTGACTCCGATAAAGATGGCAGAATTAATTACGAGGAGTTTGTAGCTATGATGAGAAAGGGGACGCAAGATAATGATGACAAAAGAGAAACAAAGATAACTTAG 1617 0.4286 MKPVSLCQQSVQEQKVKNDTEEHREEQSKAKHKLKGAEPNGSTTPILPTWLSPAPSTYSSYNASSSSSQLGPILGKPYIDINGLYTFEKEVGRGKFGITYLCTEKATRRNYACKCIPRRKLTSKKGIEDVKREIMILQHLTGQPNIVQFKGAYEDRQNVHLVMELCSGGELFDRIIAKGSYSEGEAALIFRQIVNVVHACHFMGVMHRDLKPENFLLATRDENSPLKATDFGLSVFIEQGKEYKEFVGSAYYVAPEVIKRNYGKEIDVWSAGVILYILLSGVPPFWAENDKGIFEAIVEGKVDLQSPPWPSISAAAKDLISKMLAYDPKKRITAADALEHQWMKEGGEASDKPIDSAVLIRMKQFRAMNKMKKLALKVIAENLSEEEIKGLKQMFNNMDTDSSGTITFEELKAGLAKLGSKLTESEIRQLMDAADVDRNGTIDYYEFITATMHRHRLEKEENLYKAFQYFDKDNSGFITRDELRQALAEYGMGDEATIDEVIDDVDSDKDGRINYEEFVAMMRKGTQDNDDKRETKIT 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0098 538 Gene3D Transferase(Phosphotransferase) domain 1 171 350 - -
Glsi10g0098 538 Pfam Protein kinase domain 85 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0098 538 SUPERFAMILY EF-hand 382 523 IPR011992 -
Glsi10g0098 538 MobiDBLite consensus disorder prediction 15 36 - -
Glsi10g0098 538 MobiDBLite consensus disorder prediction 1 48 - -
Glsi10g0098 538 CDD STKc_CAMK 85 342 - -
Glsi10g0098 538 ProSiteProfiles EF-hand calcium-binding domain profile. 494 528 IPR002048 GO:0005509
Glsi10g0098 538 Gene3D - 351 531 - -
Glsi10g0098 538 FunFam Calcium-dependent protein kinase 1 87 170 - -
Glsi10g0098 538 SUPERFAMILY Protein kinase-like (PK-like) 84 351 IPR011009 -
Glsi10g0098 538 FunFam Calcium-dependent protein kinase 1 351 526 - -
Glsi10g0098 538 Gene3D Phosphorylase Kinase; domain 1 87 170 - -
Glsi10g0098 538 SMART serkin_6 85 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0098 538 FunFam calcium-dependent protein kinase 1 171 350 - -
Glsi10g0098 538 ProSitePatterns EF-hand calcium-binding domain. 471 483 IPR018247 -
Glsi10g0098 538 Pfam EF-hand domain pair 460 523 IPR002048 GO:0005509
Glsi10g0098 538 Pfam EF-hand domain pair 391 451 IPR002048 GO:0005509
Glsi10g0098 538 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Glsi10g0098 538 SMART efh_1 390 418 IPR002048 GO:0005509
Glsi10g0098 538 SMART efh_1 497 525 IPR002048 GO:0005509
Glsi10g0098 538 SMART efh_1 462 490 IPR002048 GO:0005509
Glsi10g0098 538 SMART efh_1 426 454 IPR002048 GO:0005509
Glsi10g0098 538 ProSitePatterns EF-hand calcium-binding domain. 435 447 IPR018247 -
Glsi10g0098 538 ProSitePatterns EF-hand calcium-binding domain. 506 518 IPR018247 -
Glsi10g0098 538 ProSiteProfiles EF-hand calcium-binding domain profile. 422 457 IPR002048 GO:0005509
Glsi10g0098 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Glsi10g0098 538 ProSiteProfiles EF-hand calcium-binding domain profile. 386 421 IPR002048 GO:0005509
Glsi10g0098 538 ProSiteProfiles EF-hand calcium-binding domain profile. 458 493 IPR002048 GO:0005509
Glsi10g0098 538 PANTHER SERINE/THREONINE-PROTEIN KINASE 63 518 - -
Glsi10g0098 538 ProSiteProfiles Protein kinase domain profile. 85 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0098 538 ProSitePatterns EF-hand calcium-binding domain. 399 411 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0098 Glsi-ChrGlsi10 733530 737766 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0098 66 533 EF-hand Containing Proteins AT3G20410 70.299 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi10g0098 Pkinase 1e-76 CL0016