Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0086 ATGCTCTGGTTTCTTCCTTTTTGTGTTCTCATCGGGTTCTCGTGGGCGAGTGCTGTGTTTACCGCAAAGAAGAGTGCGGTGGTGGCTTTGGGCTTTGTGCTTGATTGCTATGCGGTCGATTTTGGCTCTGCGCCACCTTGGGAATGGGGTGCTATCTTTGCTGCTTCTTGTTACTGGTCTGAAATTGTGCGAGTCCACGTCGACTTGTGTTCCCCCGGGGTGCGTATGGAAGACACAGAGAGTAGCAGTAGCAGAGCTAGCATGTCTGGGTGGAATCATAGTCGAAAGCAGAGGCAGAAGGTTGAAGTTTATCAGGAGGTTCTGAGTCGACTTAGGGAATTGAATGTCCCGGAGGCTGCGGTTCCGGGTTTTGAGGACGAACTTTGGACTCACTTCTATCAACTTCCCACAAGGTATGCAATGGATATGAATGTGGAGAGGGCTCAAGATGTGCTTATGCATAAAAGGTTACTGCACATGGCACATGCCCCTGCTACGACACCTGCTGTTGAAGTCCGTCTAGTGCAGGCAGGTGACTCTATATTAGAATCTAGGAGCCTATATCCTGTTTCCAACACTGTTCGTTCTGCTTCTGCCCCGGCCTTTGGTTCGCCAGCTAACTTGCAACTTGTTCTTGGAGCCAGCCAGTTACAAGTTCAAGATAAGAATAGCAATTTGGATTTTTATACACATTATTCCAGCCCAATGCATGAAATCACAATTTCAACAAACGACAAGCGAAAACTTCTGAGTCAGTTGACTTCCTTACTGTCTGAGACTGGGCTGAACATCCAAGAAGCGCATGCTTTTTCCACATTGGACGGTTATTCATTGGATGTTTTTGTTGTTGATGGTTGGGATGTTGAGGAGACACAGAAGCTAAAACATACACTGACAAAGAAAATTCAGAAACTTGAGAAGAATCCTTGGTTCAAGGAAATTGGCAGTCCTACTGCAGAGGAAGAAAAAACCGGGCTCAATTGTATCTCTAATCATGTGAATCTATCCATTTGCGGATTTGTTTCCTCGGAAATAGATGCACGCTGTTTGAACTATGAAAAGAAAATTGCATCTGGACCTTTCTGTGATTTGTATAAAGGTTCTTTCTTTAATCAAGCTGTGGCTATCAAAGTGCTTAAGACTGAGAACTTGAATGAAAATATGCAAAGGGAGTTTACCCAAGAGGTCAATATCCTGAGTAAAGTTTCTCACAAGAATGTTGTCAAATTTATTGGTGCCTGTACAAAGCCTCCACAGCTATACGTTGTCACAGAATACATGTCTGGTGGAAGTATGTATGAGTTTTTGCACGTACAGAAGGCAGTCCTTACTCTTCCATCTTTGCTCAAAGTAGCAATTGATGTTTCGGAAGGAATGAAATACTTGCATCAGAATGATATCATACATAGGGACCTTAAAGCTGCTAATCTTTTGATGGATGAGAAAGGGGTAGTTAAGGTTGCTGATTTTGGTGTAGCCAGAGTGCAAGATCAGTCTGGCGTTATGACTGCAGAAACTGGAACTTACCGGTGGATGGCTCCCGAGGTCATTGAACACAAACCATATGATCACAAAGCCGATGTTTTTAGCTTTGGAATTGCTCTATGGGAGCTTCTTACAGCGAAGCTTCCTTATGAGCATTTGTCACCATTGCAAGCAGCAGTTGGAGTGGTCCAGAAGGGTTTGAGGCCAAAAATTCCGAGGCATACTCATCCAAAGTTAGTGGAATTGCTTACACGGTGCTGGCACCAAGATCCTTCTTCGAGACCCGAATTCTCAGAAATTCTGGAATTTCTGCAGCATTTGACCAATAGGGTATGA 1821 0.4415 MLWFLPFCVLIGFSWASAVFTAKKSAVVALGFVLDCYAVDFGSAPPWEWGAIFAASCYWSEIVRVHVDLCSPGVRMEDTESSSSRASMSGWNHSRKQRQKVEVYQEVLSRLRELNVPEAAVPGFEDELWTHFYQLPTRYAMDMNVERAQDVLMHKRLLHMAHAPATTPAVEVRLVQAGDSILESRSLYPVSNTVRSASAPAFGSPANLQLVLGASQLQVQDKNSNLDFYTHYSSPMHEITISTNDKRKLLSQLTSLLSETGLNIQEAHAFSTLDGYSLDVFVVDGWDVEETQKLKHTLTKKIQKLEKNPWFKEIGSPTAEEEKTGLNCISNHVNLSICGFVSSEIDARCLNYEKKIASGPFCDLYKGSFFNQAVAIKVLKTENLNENMQREFTQEVNILSKVSHKNVVKFIGACTKPPQLYVVTEYMSGGSMYEFLHVQKAVLTLPSLLKVAIDVSEGMKYLHQNDIIHRDLKAANLLMDEKGVVKVADFGVARVQDQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIALWELLTAKLPYEHLSPLQAAVGVVQKGLRPKIPRHTHPKLVELLTRCWHQDPSSRPEFSEILEFLQHLTNRV 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0086 606 FunFam Serine/threonine-protein kinase isoform 1 342 428 - -
Glsi10g0086 606 ProSiteProfiles Protein kinase domain profile. 350 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0086 606 Pfam Protein tyrosine and serine/threonine kinase 351 599 IPR001245 GO:0004672|GO:0006468
Glsi10g0086 606 Coils Coil 288 308 - -
Glsi10g0086 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Glsi10g0086 606 CDD STKc_MAP3K-like 356 599 - -
Glsi10g0086 606 Gene3D Transferase(Phosphotransferase) domain 1 428 606 - -
Glsi10g0086 606 ProSiteProfiles ACT domain profile. 238 319 IPR002912 -
Glsi10g0086 606 SMART serkin_6 350 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0086 606 SUPERFAMILY ACT-like 235 306 IPR045865 -
Glsi10g0086 606 PRINTS Tyrosine kinase catalytic domain signature 526 548 IPR001245 GO:0004672|GO:0006468
Glsi10g0086 606 PRINTS Tyrosine kinase catalytic domain signature 570 592 IPR001245 GO:0004672|GO:0006468
Glsi10g0086 606 PRINTS Tyrosine kinase catalytic domain signature 424 437 IPR001245 GO:0004672|GO:0006468
Glsi10g0086 606 PRINTS Tyrosine kinase catalytic domain signature 461 479 IPR001245 GO:0004672|GO:0006468
Glsi10g0086 606 PRINTS Tyrosine kinase catalytic domain signature 507 517 IPR001245 GO:0004672|GO:0006468
Glsi10g0086 606 SUPERFAMILY Protein kinase-like (PK-like) 338 599 IPR011009 -
Glsi10g0086 606 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 185 602 - -
Glsi10g0086 606 Gene3D Phosphorylase Kinase; domain 1 341 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0086 Glsi-ChrGlsi10 678499 684711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0086 73 606 MAP Kinase Kinase Kinase AT4G35780 56.490 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Glsi10g0086 PK_Tyr_Ser-Thr 9.5e-74 CL0016