Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0085 ATGTCGCCGGAGGAGAGCAAGCATTACCCTCCCCCACTTGCCTCTCACGAGGACGTCGTCAAGGACCCTACTTTTTTCTGGGACACTCTCAGGCGCTTTCACTTTGTTATGGGTACCAAGTTTATGATTCCTGTGATTGGGGGGAAGGAACTGGATTTGCACGTTCTCTACGTGGAGGTTACAAAGAGGAGTGGTTATGAGAAGGTAGTGGCAGAGAAGAAATGGAGGGAAGTGGGTAATGTATTCAGGTTCTCTCCTACTACAACAAGTGCTTCTTTTGTACTGAGGAAGCACTACTTCAGTCTTCTTTATCATTACGAACAAGTTCACTTCTTTAAGGTTCGGGGTCCTCTGTACACTCCATCAGCAGCTGCATTTTCTGTCAGCAACCAATCATGGAGACCTGAATTAGCTATTGTGGAATATTCACCCAAGCGGATAAACGAGTGTCCTCCTTCCCATAATGAAGTAAAGGGAACGATCGAGGGGAAATTCGATTGTGGTTATTTGGTGTCTGTGAAAGTGGGTTCGGAGGTTCTTAAAGGAGTGCTTTACCATCCAGAGCAATCGGATGCTTCTCCATCAGTTTCCAAATATGAAAGTGCGATAGTACCATACAATCGCAAAAGTCGGCGGTCGGGGAGGAGGAAGCGGAACAGAAGAAGGTGGGACCCTAACTACCCGAAGCCAAATAGGAGTGGGTATAACTTCTTTTTTGCCGAGAAGCATTACAAGCTCAAAGCCCTCTACCCAAACAGAGAAAGGGAGTTTACCAAAATGATTGGGCAGTCATGGAGCAGTCTTAGCCAGGAAGAGAGACTGGTTTACCAGAACATTGGCTTGAGAGACAAAGAACGATACAAGAGAGAATTGAGACAGTACAAAGAGAAAATGAAGCTTAGGCAGACAGCCGAATGA 918 0.4608 MSPEESKHYPPPLASHEDVVKDPTFFWDTLRRFHFVMGTKFMIPVIGGKELDLHVLYVEVTKRSGYEKVVAEKKWREVGNVFRFSPTTTSASFVLRKHYFSLLYHYEQVHFFKVRGPLYTPSAAAFSVSNQSWRPELAIVEYSPKRINECPPSHNEVKGTIEGKFDCGYLVSVKVGSEVLKGVLYHPEQSDASPSVSKYESAIVPYNRKSRRSGRRKRNRRRWDPNYPKPNRSGYNFFFAEKHYKLKALYPNREREFTKMIGQSWSSLSQEERLVYQNIGLRDKERYKRELRQYKEKMKLRQTAE 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0085 305 Gene3D - 14 115 IPR036431 GO:0003677
Glsi10g0085 305 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 301 - -
Glsi10g0085 305 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 228 295 IPR009071 -
Glsi10g0085 305 Pfam ARID/BRIGHT DNA binding domain 26 107 IPR001606 GO:0003677
Glsi10g0085 305 Gene3D High mobility group box domain 211 305 IPR036910 -
Glsi10g0085 305 Pfam HMG (high mobility group) box 228 295 IPR009071 -
Glsi10g0085 305 SMART hmgende2 227 296 IPR009071 -
Glsi10g0085 305 CDD HMG-box_AtHMGB9-like 228 294 - -
Glsi10g0085 305 MobiDBLite consensus disorder prediction 209 223 - -
Glsi10g0085 305 ProSiteProfiles ARID domain profile. 20 111 IPR001606 GO:0003677
Glsi10g0085 305 Coils Coil 284 304 - -
Glsi10g0085 305 SUPERFAMILY ARID-like 15 115 IPR036431 GO:0003677
Glsi10g0085 305 SUPERFAMILY HMG-box 225 298 IPR036910 -
Glsi10g0085 305 SMART bright_3 21 112 IPR001606 GO:0003677
Glsi10g0085 305 SMART ARID_2 17 107 - -
Glsi10g0085 305 MobiDBLite consensus disorder prediction 207 228 - -
Glsi10g0085 305 CDD ARID_HMGB9-like 22 107 IPR045303 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0085 Glsi-ChrGlsi10 676361 678001 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0085 2 302 ARID Transcription Factor Family AT1G76110 66.987 5.41e-138 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Glsi10g0085 ARID 1.2e-17 CL0123