Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0082 ATGAGCCAAGGCCGCGGAGAGAGAAAGAGAGGCTGTTACAAATACGACTCCTACATACTGTCATCTCCAAGCCTATCACCATCAGAAATCTCTTTACAGTTGAGATTTGAGAATTACGTGATTCCCACATCAGTGGACGGTGAGGAATTTCCTACTTTTCTACTTATAGGCTCATGCCTCCCTCGCAAATTCACGCTGCAAACCCCAACTGAATCTGGTACGGTTCTGCTATTGGCCTTGAATATTTCATGTTTTTCCTTGTTTTCTGAGCTTCACTACTGCTTTTCGGAAGCTATTATTTTACAACCTGAGAAGTGTGAGCATCAACTTCAGTTTATTATGTTGTTAATTGACTCCTTAGTTGGTTGCTGTGTGTTATCTTTACTTTTGAACTGGCATCTTGAATGGGATGAAAAAGGTGGTTTCTATATTGGTGCCGAATTCGTTGATCCAGTGTTGCAAACCCTTGAGTTGATATGGGAATTTGATCAAACTAATCAACAAAATGATCCTGGTAGAATTATACGAGATGGAAAGGAAATCCTTTTTCAGGCATTCAACTGGGAGTCTCACAAGTACGATTGGTGGAGAAATTTAGAAAGAAAAGTTCCTGACATAGCAAAAGCTGGATTTACTTCAGCATGGTTGCCACCAGCAACTCATTCCTTCTCACCTGAAGGTTACACTCCACAAAACCTTTACTCTCTCAATAGTTCATATGGTTCTGAGCATCAATTAAGAGCTTTGCTTCAAAAGATGAAGCAATACAGTGTCAGAACAATGGCGGATATCGTCATCAATCATCGTGTTGGCACGACCCAAGGACATGGAGGGATGTATAATCGCTATGATGGAATTCCATTATCATGGGATGAACGTGCTGTGACGTCATGTACTGGTGGTCTGGGTAATCGAAGCACAGGGGCCATTTTCCATGGGTTTCCGAATATTGACCATACCCAAGATTTTGTGAGAAAGGATATCATTGGATGGCTACGCTGGCTACACAATGGTGTAGGCTTTCAGGATTTTCGTTTTGATTTTGCAAGAGGTTATTCACCAAAATATGTGAGAGAATATGTTGAAGGAGCAAAGCCAGCATTCTCTGTTGGGGAGTACTGGGATTCTTGCAACTACCAAGGTTGTGTTTTGGACTATAACCAAGATAGCCATAGACAAAGGATAATCAATTGGATTGATGGCTCAGGTCAGCTGTCAACCGCATTCGACTTCACAACAAAAGGAATTCTCCAGGAAGCTGTTAAGGGAGATTTTTGGCGTCTACGTGATTCTCAAGGAAAGCCACCAGGCGTGATAGGATGGTGGCCTTCAAGGGCAGTCACATTTCTAGATAACCACGATACAGGCTCAACACAGGCTCATTGGCCCTTTCCCTCAAATAACATTATGGAGGGTTATGCTTACATATTGACTCATCCAGGGATACCAACAGTTTTTTATGATCACTTTTTCGATTGTGGTAACTCCATCCATGAGCAGATTGTGAAGTTGATTGACATCCGCAAGCGACAAGGTATTCACAGTCGATCATCTGTCAGGATTCTGGATGCGAAGCAAAATCTTTACTCTGCAATAATAGGGGAGAAAGTGTGCATGAAGATTGGAGATGGTTCATGGTGCCCTTCTGGGAGGGAATGGACGCTGGCAACGTGTGGCCACAGATATGCAGTATGGCGCAAATAG 1704 0.4272 MSQGRGERKRGCYKYDSYILSSPSLSPSEISLQLRFENYVIPTSVDGEEFPTFLLIGSCLPRKFTLQTPTESGTVLLLALNISCFSLFSELHYCFSEAIILQPEKCEHQLQFIMLLIDSLVGCCVLSLLLNWHLEWDEKGGFYIGAEFVDPVLQTLELIWEFDQTNQQNDPGRIIRDGKEILFQAFNWESHKYDWWRNLERKVPDIAKAGFTSAWLPPATHSFSPEGYTPQNLYSLNSSYGSEHQLRALLQKMKQYSVRTMADIVINHRVGTTQGHGGMYNRYDGIPLSWDERAVTSCTGGLGNRSTGAIFHGFPNIDHTQDFVRKDIIGWLRWLHNGVGFQDFRFDFARGYSPKYVREYVEGAKPAFSVGEYWDSCNYQGCVLDYNQDSHRQRIINWIDGSGQLSTAFDFTTKGILQEAVKGDFWRLRDSQGKPPGVIGWWPSRAVTFLDNHDTGSTQAHWPFPSNNIMEGYAYILTHPGIPTVFYDHFFDCGNSIHEQIVKLIDIRKRQGIHSRSSVRILDAKQNLYSAIIGEKVCMKIGDGSWCPSGREWTLATCGHRYAVWRK 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0082 567 SMART aamy 180 508 IPR006047 GO:0005975
Glsi10g0082 567 PRINTS Alpha-amylase signature 444 456 IPR006046 GO:0004556|GO:0005975|GO:0043169
Glsi10g0082 567 PRINTS Alpha-amylase signature 257 268 IPR006046 GO:0004556|GO:0005975|GO:0043169
Glsi10g0082 567 PRINTS Alpha-amylase signature 341 352 IPR006046 GO:0004556|GO:0005975|GO:0043169
Glsi10g0082 567 CDD AmyAc_arch_bac_plant_AmyA 181 519 - -
Glsi10g0082 567 Gene3D Glycosidases 180 512 - -
Glsi10g0082 567 Gene3D - 513 567 IPR013780 -
Glsi10g0082 567 Pfam Alpha-amylase C-terminal beta-sheet domain 510 566 IPR012850 GO:0004556|GO:0005509|GO:0005975
Glsi10g0082 567 SUPERFAMILY (Trans)glycosidases 188 497 IPR017853 -
Glsi10g0082 567 PANTHER ALPHA-AMYLASE 165 566 - -
Glsi10g0082 567 SUPERFAMILY Glycosyl hydrolase domain 513 567 - -
Glsi10g0082 567 SMART alpha-amyl_c2 509 567 IPR012850 GO:0004556|GO:0005509|GO:0005975
Glsi10g0082 567 Pfam Alpha amylase, catalytic domain 202 269 IPR006047 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0082 Glsi-ChrGlsi10 663859 668910 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0082 162 567 Glycoside Hydrolase AT1G76130 79.557 0.0 701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0082 10 663859 668910 Glsi10g0082 10 663859 668910 ECH