Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0072 ATGGCCGGCCAGTGCTCTAATGATGGTTCCAGTGCTAGCAATATTTCGGCAGAATGTTCGGATTCAACTTTTCAGCTCAATATTAAGACTCTAGATTCCCACATTTACAGTTTTCAAGTGGATAAAAATATGCCAGTTTCATTATTGAAGGAGAAAATAGCGAATGAAATTGGCGTTCCAGTTGGTCAGCAACGGCTAATATTCAGGGGGAAAGTCTTAAAGGATGATCATGTTCTTTCTGAGTATCACATTGAGAATGGGCATACATTGCATTTAGTAGAAAGGCAACCAAACCAGTCACAGGCTTCTGGCACAAGCTCTGGTGAGACAACTGGTGCAAATGGTAACCGAGGAAATGATGCAAGCTCTGGAGCCCCACGTAACCGTGTTGGGCAAATTTCACACAGTGTTGTTCTAGGGACCTTTAATTTGGGAGAACAAGGTGAAGGCATTGTTCCTGACCTTAATCGGGTTATTGGTGCGGTTTTGAATTCTATTGGAATTGGTGGGCAGAGCACAGGTGGTGTTACAAATGTTACACAGTCTTCTTCTTCAGCTCCTTCAGGGAGCGAAACGGAAGGAATGCATGTTGGAAATCAGAACCAAGCAGGAAATCAAGCACAGTCTGGACAGACATTTCCTAGTCGGCCATTTCAATCTTTGCCTCACGCTGTTCAGATTCCTCTGGCTGCAGGATCCTTAACTGTTCCATCACTCAGTACACCAATTCCTGATTCACTGGATACTCTGTCTGAGTTTATAAATCACATGGAGCAGACCCTATCGCAAAATGGTTATCAACCAAATTTGTCTTCCACTAATGTTGGAGAACAACCGCGAGTGAGACTACCTTCTAACGCACAAGGGTTGCCAACAGTTGAAGCATTAATCACTGTCTTGCGTCGTGCAGAATGGCTGCTCGGTGGTCATGCTGTTGCTGCACTATCTCATATTGCAGGACGCTTGGAGCAAGAGGGAACAACTAATGATCCAAGTGTAAGGAGTCAAATACAGTCAGAGTCAATGCAAATAGGACTTGCAATGCAGCATTTGGGTGCATTTCTACTTGAGCTTGGCCGTACAATCTTGACACTGCGCATGGGACAGTCTTCTGCTGAATCTGTTGTCAATGCTGGACCAGCAGTTTATGTTTCTCCATCTGGGCCTAATCCTATAATGGTGCAGCCTTTCCCACTTCAGACAAGCTCCCTCTTTGGTGGTTCTGTTCCGTCAACTCCTGCAACAGTTGGCACAGCTGGAGTTGGAAATGCCCCTCGGAACATAAACATTCATATACATGCTGGTACCTCTCTTGCGCCAATTGTTTCAGCAATTGGTTCTAGGCCAAATAATGGGGAAGGGACACCAAATGAACGGCGCAATGCTCCTGGCTCTGGTGATTCAGGTTCAACACGTGTATTACCTGTGAGAAATATCATTGCAGCAGCTGTACCATCACGCCCTCCTGGTGTTGGAATCAGTAGCAGCATGCAGCCCGGTCTTGGTGTTTCTACTTCACAGCCGCCTTCTGATTCAGTTTCATTGTCATCTGTTTTAGCTGAAGTCAACTCTCGCATTAGAAACTTTGTCGGAAACACTCAAGGAGATGACACAGCTCTGTCAGGTCAAGTGGAGTCAACTAACCGAGAGTTGTCTATTGGTTCTGAATCACAAGCCACTCTGGCAAATGAACAGCTAGATACCATGGAGATGAATGGTGTTGGGGCTGCCGGTGTGTCTTCAGTTGGGTGCACATCTGAAAGTGGACTACACATGCCCCAACATGAGGCAGTCCAAACCTTTAACAACGAGGAGAGAGATATTTTGAGCAACAAATTTGTTTCAAATTCTTCCAGTCAAGATTCACAAAGTTTTTCAAGTGGAGAAACGATAGTAAAGTCAGAAGAAGTACAAGAAAATGCTCATTCTGTTGGTGAAAAACAACATTTAGCTGAAAGTGCCAAAGCTGCCCCACTTGGATTGGGCGTGAGTGGTTTGGAGTTTAAGAGGAGAAGCAGGCTTCAACATCCTGCAAGTAAAGGTTCTGATGATGGATCAGCCAGTTCTTCTGGTAACCAAAATCAACGAGCTAGAACAAGTGGTCAACATATATTGCAAGCGCTTGCAAGTCATGGAACTTCTATGAATCAGAGAAATGTTGATGGGCCATCCCAAGGGCTCTCTACCCCTGTTGATGGCCAGGTTGATGTGGCTGGTGTTATGTCTCAGGTTTTGCACAGCCCTGCTTTGAATGGTTTGTTGGCAGGGGTTTCACAGCAAACTGGAGTTGGCTCACCTGATGTCCTGAGGAACATGTTGCAGCAGTTCACACAGAGCCCACAGATGAGGAACACTGTCAATCAAATGGTCCAACAGGTTGGCAGTCAGGATATGGGGAATATGTTTGCTGGAATGGAAAGGGGGCAAGGTGGTGGAATTGACTTATCGAGGATGTTTCAACAGATGATGCCCATTGTATCTCAAGCTCTTGGCAGTAGAACTCCTTCTCAGCCATTCTCTGCTGCAGGGACAGAGTCCCACAGAGATGGAACACATAGCAGAGATGAAAATTCTGATTATCGAAGTTTACAGATCAACCTTCAACCAGTGGCAGAGAGGATTGAGCACCTGAGTCCACGTGCAGATGTTTTCCGTGCTGTGATTGAAAATGCTATCCAGCTATCTGGCAGTGGAAATGCTTATGATGCTCTTCTGGATGAGTTGTGCTGCAATGAGGGTCTAGCTAGTGAATATGTGGAGATGTTACGACATGATGTGAGCGAGCGGCTCAAGGGTGATTCTGGGCTGGACAAGTTCTAA 2820 0.4571 MAGQCSNDGSSASNISAECSDSTFQLNIKTLDSHIYSFQVDKNMPVSLLKEKIANEIGVPVGQQRLIFRGKVLKDDHVLSEYHIENGHTLHLVERQPNQSQASGTSSGETTGANGNRGNDASSGAPRNRVGQISHSVVLGTFNLGEQGEGIVPDLNRVIGAVLNSIGIGGQSTGGVTNVTQSSSSAPSGSETEGMHVGNQNQAGNQAQSGQTFPSRPFQSLPHAVQIPLAAGSLTVPSLSTPIPDSLDTLSEFINHMEQTLSQNGYQPNLSSTNVGEQPRVRLPSNAQGLPTVEALITVLRRAEWLLGGHAVAALSHIAGRLEQEGTTNDPSVRSQIQSESMQIGLAMQHLGAFLLELGRTILTLRMGQSSAESVVNAGPAVYVSPSGPNPIMVQPFPLQTSSLFGGSVPSTPATVGTAGVGNAPRNINIHIHAGTSLAPIVSAIGSRPNNGEGTPNERRNAPGSGDSGSTRVLPVRNIIAAAVPSRPPGVGISSSMQPGLGVSTSQPPSDSVSLSSVLAEVNSRIRNFVGNTQGDDTALSGQVESTNRELSIGSESQATLANEQLDTMEMNGVGAAGVSSVGCTSESGLHMPQHEAVQTFNNEERDILSNKFVSNSSSQDSQSFSSGETIVKSEEVQENAHSVGEKQHLAESAKAAPLGLGVSGLEFKRRSRLQHPASKGSDDGSASSSGNQNQRARTSGQHILQALASHGTSMNQRNVDGPSQGLSTPVDGQVDVAGVMSQVLHSPALNGLLAGVSQQTGVGSPDVLRNMLQQFTQSPQMRNTVNQMVQQVGSQDMGNMFAGMERGQGGGIDLSRMFQQMMPIVSQALGSRTPSQPFSAAGTESHRDGTHSRDENSDYRSLQINLQPVAERIEHLSPRADVFRAVIENAIQLSGSGNAYDALLDELCCNEGLASEYVEMLRHDVSERLKGDSGLDKF 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0072 939 MobiDBLite consensus disorder prediction 485 512 - -
Glsi10g0072 939 MobiDBLite consensus disorder prediction 448 472 - -
Glsi10g0072 939 PRINTS Ubiquitin signature 76 97 IPR019956 -
Glsi10g0072 939 PRINTS Ubiquitin signature 55 75 IPR019956 -
Glsi10g0072 939 MobiDBLite consensus disorder prediction 831 846 - -
Glsi10g0072 939 MobiDBLite consensus disorder prediction 170 218 - -
Glsi10g0072 939 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Glsi10g0072 939 SMART ubq_7 24 95 IPR000626 GO:0005515
Glsi10g0072 939 FunFam Large proline-rich protein BAG6 16 109 - -
Glsi10g0072 939 MobiDBLite consensus disorder prediction 635 656 - -
Glsi10g0072 939 MobiDBLite consensus disorder prediction 679 701 - -
Glsi10g0072 939 MobiDBLite consensus disorder prediction 673 701 - -
Glsi10g0072 939 MobiDBLite consensus disorder prediction 491 512 - -
Glsi10g0072 939 MobiDBLite consensus disorder prediction 635 649 - -
Glsi10g0072 939 CDD Ubl_ubiquitin_like 26 93 - -
Glsi10g0072 939 Gene3D - 12 108 - -
Glsi10g0072 939 MobiDBLite consensus disorder prediction 533 556 - -
Glsi10g0072 939 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Glsi10g0072 939 MobiDBLite consensus disorder prediction 443 472 - -
Glsi10g0072 939 SUPERFAMILY Ubiquitin-like 19 98 IPR029071 -
Glsi10g0072 939 MobiDBLite consensus disorder prediction 89 128 - -
Glsi10g0072 939 MobiDBLite consensus disorder prediction 831 859 - -
Glsi10g0072 939 MobiDBLite consensus disorder prediction 92 128 - -
Glsi10g0072 939 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 11 937 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0072 Glsi-ChrGlsi10 594406 603790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0072 25 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.845 8.00e-11 58.9