Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0071 ATGGAAGAAAAATTAGCTTTTAACAGTGAAGGACAGCCTATCCAATGCAAAGCGGCCGTTTGTCGGAAACCAGGAGATCCATTGGTTATCGAGGAGATCATTGTAGCGCCGCCAATGCTTCGTGAAGTTCGGATTCGTGTAATATGCACGTCTCTCTGTCACAGTGATATTACATTTTGGAGGATGAAGGATCCTCCTGGAATTTTCCCAAGAATTCTGGGTCACGAGGCTGTTGGGGTTGTGGAAAGTGTAGGAGAGGATGTAAGCGAAGTTAAAAAAGGAGACGTGGTTCTTCCAATTTTCCTACCAGAATGTGGGGAGTGTGTAGATTGCAAATCAAAGAAGAGCAACCTTTGTTCAAAGCTTCCCTTCAAGGTGTCTCCTTGGATGCCCAGACACGGTAGCAGCAGATTCACAGACCTAAAAGGGGAGATCATATACCATTTTCTGTTTGTTTCAAGTTTTAGCGAGTACACTGTGGTCGACGTTGCCAATTTAACAAAGATTGATCCAGCAATTCCTCCCAACAGAGCATGCCTCCTCAGTTGCGGTGTATCAACCGGGGTAGGTGCCGCTTGGAGGACGGCAGATGTGGAGGCAGGCTCGACGGTCGCTATTTTTGGGCTGGGCTCTATTGGATTAGCAGTTGCTGAGGGAGCTAGACTTTGTGGAGCTGCTAGGATTATCGGTGTGGATGTCAACCCAGAAAAATTTGAAATTGGAAAGAAGTTCGGACTCACGGACTTTGTCAATGCTGGAGAATGTGGGAGCAAACCTGTTAGCCAGGTTATCTCCGATATTACTGACGGAGGAGCAGATTATTGCTTTGAATGCGTTGGGATGGCGTCATTGGTGCATGAAGCATATGCTTCTTGTCGAAAGGGTTGGGGAAAAACAATAGTTTTGGGAGTTGACAGGCCAGGGTCCAGGTTGAGCCTTAGCTCTAGTGAGGTGCTTCATGCTGGGAAAAGCCTCAAGGGATCCTTATTTGGAGGACTGAAACCGAAGTCTGATATCCCTATTCTCCTTAAACGTTTCATGGACAAGGAGCTGCAACTGGAGAAGTTTGTCACACATGAGATGGACTTTAAGGACATAAATGAAGCTTTTAATCTACTGCTCGAAGGACATTGTCTTCGGGTTGTGATTTGGATGGACGAATAA 1164 0.4622 MEEKLAFNSEGQPIQCKAAVCRKPGDPLVIEEIIVAPPMLREVRIRVICTSLCHSDITFWRMKDPPGIFPRILGHEAVGVVESVGEDVSEVKKGDVVLPIFLPECGECVDCKSKKSNLCSKLPFKVSPWMPRHGSSRFTDLKGEIIYHFLFVSSFSEYTVVDVANLTKIDPAIPPNRACLLSCGVSTGVGAAWRTADVEAGSTVAIFGLGSIGLAVAEGARLCGAARIIGVDVNPEKFEIGKKFGLTDFVNAGECGSKPVSQVISDITDGGADYCFECVGMASLVHEAYASCRKGWGKTIVLGVDRPGSRLSLSSSEVLHAGKSLKGSLFGGLKPKSDIPILLKRFMDKELQLEKFVTHEMDFKDINEAFNLLLEGHCLRVVIWMDE 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0071 387 Gene3D - 19 380 - -
Glsi10g0071 387 Gene3D - 188 328 - -
Glsi10g0071 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 173 348 IPR036291 -
Glsi10g0071 387 SUPERFAMILY GroES-like 336 384 IPR011032 -
Glsi10g0071 387 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Glsi10g0071 387 Pfam Alcohol dehydrogenase GroES-like domain 42 168 IPR013154 -
Glsi10g0071 387 PANTHER ALCOHOL DEHYDROGENASE 11 383 - -
Glsi10g0071 387 SUPERFAMILY GroES-like 9 199 IPR011032 -
Glsi10g0071 387 FunFam Alcohol dehydrogenase 6 19 200 - -
Glsi10g0071 387 FunFam S-(hydroxymethyl)glutathione dehydrogenase 188 328 - -
Glsi10g0071 387 Pfam Zinc-binding dehydrogenase 212 338 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0071 Glsi-ChrGlsi10 585438 589028 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0071 41 186 Monolignol Biosynthesis Gene Families AT4G37970 29.054 5.56e-10 58.2