Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0065 ATGCTGTCATTCCACGTGTCGTCTCGAAAATATGCCTACAAAAGTGGACTGGAATACCGCGTATGCTGTCGCGGAAAGTTGCCATCAGAAAAGAAAGTCGAGATGGAGAAAATCGACCCAAGAAGTGGCTTCTGCACCGCCAATTCTATCTTCTACAGTAAGCGGAGGCCGGTGCCCCTACCTCAAAACCACTCCTTAGATGTCACCACTTTCATCTCCTCCCGCGCCCACCGTGGCAAGGTCGCTTTCATCGATGCTGCCACCGGTCGCCACTTCACCTTCCAGCACCTCTGGAAAGCCGTCGATGCTGTCGCAACCTCTCTCTCCGAAATGGGTATTCGAAAGGGCCATGTCGTCCTCCTCCTCTCCCCAAACTCCATTTACTTTCCCGTTGTATGCCTCGCCGTCATGTCCCTTGGAGCTATAATCACCACCACCAACCCTCTCAACACCCCCCGCGAAATCGCCAAGCAAATCTCCGATTCTAACCCTGTCATCGCCTTCACAATTCGGGCCCTCGTTCCCAAAATCACTGCAACATCAAGCCTACCGATCGTTCTCATGGAAGAAGATGTGGAGGCCCCAATTACAGAAGCCAAAATCGTGACTACACTAGGGGAGATGATGAAGAAGGAACCCAGTTCGAGCCGAGTCAGGGATCGAGTTAACCAAGACGATACTGCAACTCTGCTATACTCATCAGGTACCACGGGTCCAAGTAAAGGCGTGGTCTCCTCGCACCGGAATCTCATGGCAATGGTCCAAATCGTTTTGGGTCGCTTCCATATCGAACAGGAAGAAACCTTCATCTGCACTGTTCCTATGTTCCATATATACGGTCTAGTGGCGTTCGCGACGGGTCTTCTTGCTTCAGGATCAACAATAGTCGTGCTCTCCAAGTTCGACATGCACGAGATGCTTTCAGCGATCCAAAAGTATCGCGCCACGTACCTGCCGCTGGTGCCGCCCATACTGGTGGCGATGCTGAACGGCGGGGATGAGATTAAGTCGAAGTACAACTTGAGTTCGCTGCATTCGGTGCTGTCGGGTGGGGCTCCACTGAGCAAGGAGGTGATAGAAGGGTTTGTGGAGAAGTACCCGAAAGTGACAATTCTTCAGGGTTACGGGCTGACCGAATCAACGGGGGTCGGGGCATCGACGGACTCATTGGAGGAGAGTAGGAGGTACGGGACGGCTGGGCTATTGTCGCCGAGCACGGAGGCCAAAATTGTGGATCCTGATACTGGGGAAGCTATGCCGGTTAACCGGACGGGGGAGCTCTGGCTCAGAGGTCCCACCATCATGAAAGGTTATTTTAGTAACCAGGAAGCAACCACATCTACCCTTGACTCAGAGGGATGGTTAAGAACAGGGGATATTTGCTACATTGATGAGGATGGATATATTTTCATTGTTGATAGGTTGAAAGAACTTATTAAATACAAGGGATATCAGGTCCCTCCAGCAGAACTAGAGGCCTTGTTGCTAACTCATCCTGCAATTTCAGATGCTGCTGTCATACCATTTCCAGATAGGGAGGTTGGGCAGTATCCAATGGCTTACGTAGTAAGAAAAAGCGGAAGTAATATATCAGAAAAGGAAATTATGGATTTTGTGGCCGGACAGGTGGCTCCATATAAAAGAATTCGAAGAGTGGCATTTATATCAAGCATACCCAAAAACCCATCGGGCAAAATTCTTAGGAAGGATCTCATCAAGCTAGCCACGTCTAAACTTTGA 1740 0.5017 MLSFHVSSRKYAYKSGLEYRVCCRGKLPSEKKVEMEKIDPRSGFCTANSIFYSKRRPVPLPQNHSLDVTTFISSRAHRGKVAFIDAATGRHFTFQHLWKAVDAVATSLSEMGIRKGHVVLLLSPNSIYFPVVCLAVMSLGAIITTTNPLNTPREIAKQISDSNPVIAFTIRALVPKITATSSLPIVLMEEDVEAPITEAKIVTTLGEMMKKEPSSSRVRDRVNQDDTATLLYSSGTTGPSKGVVSSHRNLMAMVQIVLGRFHIEQEETFICTVPMFHIYGLVAFATGLLASGSTIVVLSKFDMHEMLSAIQKYRATYLPLVPPILVAMLNGGDEIKSKYNLSSLHSVLSGGAPLSKEVIEGFVEKYPKVTILQGYGLTESTGVGASTDSLEESRRYGTAGLLSPSTEAKIVDPDTGEAMPVNRTGELWLRGPTIMKGYFSNQEATTSTLDSEGWLRTGDICYIDEDGYIFIVDRLKELIKYKGYQVPPAELEALLLTHPAISDAAVIPFPDREVGQYPMAYVVRKSGSNISEKEIMDFVAGQVAPYKRIRRVAFISSIPKNPSGKILRKDLIKLATSKL 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0065 579 CDD 4CL 60 571 - -
Glsi10g0065 579 Gene3D - 477 578 IPR045851 -
Glsi10g0065 579 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 44 573 - -
Glsi10g0065 579 FunFam Long-chain-fatty-acid--CoA ligase FadD 52 476 - -
Glsi10g0065 579 Gene3D - 48 476 IPR042099 -
Glsi10g0065 579 Pfam AMP-binding enzyme C-terminal domain 490 565 IPR025110 -
Glsi10g0065 579 ProSitePatterns Putative AMP-binding domain signature. 230 241 IPR020845 -
Glsi10g0065 579 Pfam AMP-binding enzyme 75 481 IPR000873 -
Glsi10g0065 579 FunFam 4-coumarate--CoA ligase 2 477 578 - -
Glsi10g0065 579 SUPERFAMILY Acetyl-CoA synthetase-like 74 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0065 Glsi-ChrGlsi10 567270 570138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0065 38 579 Monolignol Biosynthesis Gene Families AT1G20500 66.728 0.0 759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0065 10 567270 570138 Glsi10g0065 10 567270 570138 ECH