Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0064 ATGGGCTGTTGCGTATCTTCCATTTCCAAGGATTCTACTCCCCAGACCAGCCCTCATTACGATTATCTCAAAAACAACAACCCCAATCTTGCTTCTTCCTCCAACGGCGCCGATAATACCGTTGGTACACCTGCTGCCGGCGAGCTCACGGCTTTCTCGGAGTTCTCGCTCGCCGACCTTAAAGCCGCCACCAATAACTTCAGCCCTGATCACATCGTCTCCGAGAGCGGCGAAAAAGCCCCTAATGTCGTCTACAAAGGTCGCCTCCAGAACCAAAACCGCCGTTGGATTGCTGTCAAGAAATTCACTAAATTGGCCTGGCCCGACCCCAGGCAGTTCGCTGATGAAGCATCGGGTGTTGGGAAATTAAGACACAAAAGGCTTGCCAATTTGATTGGCTATTGTTGTGATGGGGATGAGAGACTTCTTGTTGCAGAGTACATGCCCAACGACACTCTCACCAAACATCTATTTCACTGGGAGAATCAGAATATTGAATGGGCCATGCGGTTAAGAGTTGCCCTATACATTGCTGAAGCATTAGATTATTGTAGTATTGAAGGCCATCCGTTGTACCATGACTTGAATGCTTACAGAGTTCTCTTTGATGAGAATGGCGATCCCCGGCTTTCATGTTTTGGTTTGATGAAGAATAGCAGGGATGGGAAAAGTTATAGTACAAATCTTGCTTATACACCTCCAGAGTATCTGAGAAATGGGAGAGTGACCCCGGAAAGTGTTATCTTCAGCTTTGGGACTGTGTTATTGGATCTTCTAAGTGGAAAGCATATCCCTCCAAGTCATGCTCTTGATATGATAAGGGGCAAAAATATCCTTCTCCTTATGGATTCACATTTGGAGGGAAACTTTTTAACTGATGAAGCATCTGTGGTTTTTGATCTTGCCTCACAATGTTTGCAGTATGAGCCTAGGGAACGGCCCAAGACCAAGGACCTTGTTACAAAACTTTCCCCGCTGCAAAATAAACCTGATGTTCCATCACATGTAATGCTTGGAATTCCAAAGCACGAGGAAGCACCTCCTACTCCACAGCATCCTCTTTCTCCAATGGGTGATGCTTGTTCTCGCATGGACCTTACAGCTATCCATCAGATTTTGTTAATGGCACACTACAGAGATGACGAAGGGACTAATGAGTTATCTTTCCAAGAGTGGACCCAGCAAATGAGGGATATGTTGGAGGCAAGAAAGCGTGGTGACTTGGCATTTCGTGACAAGGATGTTAAGACTGCAATTGAGTGTTATTCCCAGTTTATTGATGTTGGAACCATGGTTTCCCCAACTGTCTATGCACGGAGGAGTCTTTGCCATCTGCTCTGCGATCAACCAGATGCTGCTCTGCGAGATGCAATGCAAGCACAGTGTGTCTATCCTGATTGGTCCACAGCATTTTACATGCAGGCGGTTGCTCTTTCCAAATTAAACATGCACAAGGATGCAGCTGACATGCTTAATGAGGCTGCTGCGCTTGAAGAGAAAAGGCAACGAGGGAAATAA 1518 0.4611 MGCCVSSISKDSTPQTSPHYDYLKNNNPNLASSSNGADNTVGTPAAGELTAFSEFSLADLKAATNNFSPDHIVSESGEKAPNVVYKGRLQNQNRRWIAVKKFTKLAWPDPRQFADEASGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLTKHLFHWENQNIEWAMRLRVALYIAEALDYCSIEGHPLYHDLNAYRVLFDENGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIFSFGTVLLDLLSGKHIPPSHALDMIRGKNILLLMDSHLEGNFLTDEASVVFDLASQCLQYEPRERPKTKDLVTKLSPLQNKPDVPSHVMLGIPKHEEAPPTPQHPLSPMGDACSRMDLTAIHQILLMAHYRDDEGTNELSFQEWTQQMRDMLEARKRGDLAFRDKDVKTAIECYSQFIDVGTMVSPTVYARRSLCHLLCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALSKLNMHKDAADMLNEAAALEEKRQRGK 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0064 505 SUPERFAMILY TPR-like 402 499 IPR011990 GO:0005515
Glsi10g0064 505 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 35 503 IPR045845 GO:0004672|GO:0009742
Glsi10g0064 505 Gene3D Tetratricopeptide repeat domain 397 505 IPR011990 GO:0005515
Glsi10g0064 505 ProSiteProfiles Protein kinase domain profile. 70 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0064 505 Gene3D Phosphorylase Kinase; domain 1 44 147 - -
Glsi10g0064 505 Coils Coil 480 500 - -
Glsi10g0064 505 FunFam probable serine/threonine-protein kinase At4g35230 397 505 - -
Glsi10g0064 505 FunFam probable serine/threonine-protein kinase At5g41260 149 340 - -
Glsi10g0064 505 Gene3D Transferase(Phosphotransferase) domain 1 149 340 - -
Glsi10g0064 505 SUPERFAMILY Protein kinase-like (PK-like) 52 332 IPR011009 -
Glsi10g0064 505 FunFam probable serine/threonine-protein kinase At4g35230 43 147 - -
Glsi10g0064 505 Pfam Protein tyrosine and serine/threonine kinase 83 323 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0064 Glsi-ChrGlsi10 558506 563026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0064 51 350 Glycoside Hydrolase AT3G07070 34.251 7.38e-42 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Glsi10g0064 PK_Tyr_Ser-Thr 1.3e-26 CL0016