Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0052 ATGGCGATCGATGGAGAGGAAGAAGGAGGGGAAACACTGGAGGGGAGCAATGGGTTCGATGAGTCAATGCAGTCGGAGGGTTCTGATGCGTTGGAAGAAATACAGAGAGTGATTGAATCGGTGGCTCAGTTCGGGGAATATCGAAGGACCCAGAGGAAAGAATGTCACAACCTTGCGAGGCGTTTGAAAATTTTGTTGCCACTTATCGAAGAGATTCGAGATCTCCGTTCACTGATTCCACAGAAGGGCACGACTTGGTTGAATAATTTGAAGGATGCGCTCCTTTTCGCAAAGAAATTGCTGACGTTGTGTAGCGAGGGGAGCAAGATTTACCTGGCACTCGAGAGTGAAGCGGTTATGATCAAATTTCAATCCGTCTATGAAAAGTTTAGCCAAGCTTTAGATGGTTTTCCTCGCGAAGAATTAGAAATATCAGATGAAGTGAAAGAACAGCTTGAGCTAATGTGCGTCCAACTCAGGCGAGCGAAGAGGCGAACAGATACACAAGACATAGAACTTGCAATGGATATGATTGTGGTATTCTCCAAAAATGATGATCGGAATGCAGACAGTGCTATTGTAGAAAGGCTAGCAAAAAAGCTCGAGCTTCATACTGTAGAGGATCTTAATATAGAAACAGTAGTTGTAAGGAACCTTGCTAAAGAAAGAAAGGGGCAAAACCCAGAGACTGCCCAGCAAATAATTGACCTTCTCAACAAATTCAGACAAATTGTAGGCATGGAAGAAACCAATGTTCTAGATGATCATGTCATGCCCAGAATGCTTGAGAAGAGCACATCTTTGGTCATCCCTCATGAATTTCTCTGCCCAATAACACTAGAAATAATGACAGATCCTGTTATTGTCGCTAGTGGACAGACATATGAAAGGGAGAGCATAGAGAAGTGGTTTGAGTCCAGTCACAGGACCTGCCCAAAGACTAGACAAACTCTGGCTCACTTATCATTAGCACCAAACTATGCCCTAAAAAATTTGATCTCTGTGTGGTGTGAGAAAAACAACTTTAAAATTCCTGAAAAAGATATTTCTTCGGGTCAAGAAAGCTGTTTAGCGGAACACACGGAGGACATATCATCTTTGGTTGATAACCTATCATCTGTTCATTTGGAAGTGCAGAGAAAGGCAGTGAAGAAGATACGGATGATATCGAAGGAAAATTCTGAGAATAGGGTTTTGGTTGCAAAGCACGGAGGAATACTGCCATTGGTGCAGCTTTTATCCTATCCAGATTCCAAAATACAGGAGCATGCGGTGACAGCTCTTTTAAATTTATCAATTGATGAGGGTAACAAGAAACTTATATCTAGAGAAAGGGCAATTCCAGCTATTATAGAAGTATTGGATAAAGGAAGTATTGAAGCTAAAGAAAATTCTGCAGCAGCTTTATTTAGCTTGTCAATGCTGGATGAGAATAAAGAAATCGTCGGTCTATCAAATGGCATTCCACCTTTGGTAGAATTATTAAAGAATGGGACAATTAGAGGGAAAAAAGATGCTGTGACAGCTCTCTTTAACTTATCGCTCTACCATCCAAATAAGGGTAGGGCCATTAGTGCGGGCATTGTAGCGCCCTTGCTTCAGTTGCTCATGGACATAAACTTAGGCATGATTGATGAGGCCCTCTCCATCCTCTTACTTCTTGCATCACATCCAGATGGACGGCAAGAGATTGGACAGCTCACTTTCATTGAAACTCTGGTTGGATTCATCAGAGAAGGAACTCCCAAGAACAAGGAATGTGCCGCATCTGTTCTTCTTGAGTTGAGTTCGAGTAATTCGTCCTTTATACTTGCAGCTCTTCAGTTTGGAGTGTATGAGCATTTAATGGAGATCAAACAAAATGGAACAGATAGAGGACAGAGGAAAGCAAATGCACTTTTACAGCTCATGAGCAAGAGCGAGCACATTTAA 1932 0.4203 MAIDGEEEGGETLEGSNGFDESMQSEGSDALEEIQRVIESVAQFGEYRRTQRKECHNLARRLKILLPLIEEIRDLRSLIPQKGTTWLNNLKDALLFAKKLLTLCSEGSKIYLALESEAVMIKFQSVYEKFSQALDGFPREELEISDEVKEQLELMCVQLRRAKRRTDTQDIELAMDMIVVFSKNDDRNADSAIVERLAKKLELHTVEDLNIETVVVRNLAKERKGQNPETAQQIIDLLNKFRQIVGMEETNVLDDHVMPRMLEKSTSLVIPHEFLCPITLEIMTDPVIVASGQTYERESIEKWFESSHRTCPKTRQTLAHLSLAPNYALKNLISVWCEKNNFKIPEKDISSGQESCLAEHTEDISSLVDNLSSVHLEVQRKAVKKIRMISKENSENRVLVAKHGGILPLVQLLSYPDSKIQEHAVTALLNLSIDEGNKKLISRERAIPAIIEVLDKGSIEAKENSAAALFSLSMLDENKEIVGLSNGIPPLVELLKNGTIRGKKDAVTALFNLSLYHPNKGRAISAGIVAPLLQLLMDINLGMIDEALSILLLLASHPDGRQEIGQLTFIETLVGFIREGTPKNKECAASVLLELSSSNSSFILAALQFGVYEHLMEIKQNGTDRGQRKANALLQLMSKSEHI 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0052 643 SUPERFAMILY RING/U-box 268 344 - -
Glsi10g0052 643 Pfam Armadillo/beta-catenin-like repeat 393 432 IPR000225 GO:0005515
Glsi10g0052 643 Pfam Armadillo/beta-catenin-like repeat 476 514 IPR000225 GO:0005515
Glsi10g0052 643 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 486 528 IPR000225 GO:0005515
Glsi10g0052 643 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
Glsi10g0052 643 SMART Ubox_2 273 336 IPR003613 GO:0004842|GO:0016567
Glsi10g0052 643 Gene3D - 26 138 IPR036537 GO:0007166
Glsi10g0052 643 CDD RING-Ubox_PUB 271 323 IPR045210 -
Glsi10g0052 643 SMART arm_5 393 433 IPR000225 GO:0005515
Glsi10g0052 643 SMART arm_5 557 597 IPR000225 GO:0005515
Glsi10g0052 643 SMART arm_5 516 556 IPR000225 GO:0005515
Glsi10g0052 643 SMART arm_5 475 515 IPR000225 GO:0005515
Glsi10g0052 643 SMART arm_5 434 474 IPR000225 GO:0005515
Glsi10g0052 643 FunFam RING-type E3 ubiquitin transferase 27 140 - -
Glsi10g0052 643 FunFam RING-type E3 ubiquitin transferase 269 343 - -
Glsi10g0052 643 PANTHER U BOX DOMAIN-CONTAINING 52 638 - -
Glsi10g0052 643 SUPERFAMILY ARM repeat 362 638 IPR016024 -
Glsi10g0052 643 Pfam U-box domain 270 340 IPR003613 GO:0004842|GO:0016567
Glsi10g0052 643 Gene3D - 346 642 IPR011989 -
Glsi10g0052 643 ProSiteProfiles U-box domain profile. 269 343 IPR003613 GO:0004842|GO:0016567
Glsi10g0052 643 FunFam RING-type E3 ubiquitin transferase 348 643 - -
Glsi10g0052 643 MobiDBLite consensus disorder prediction 1 25 - -
Glsi10g0052 643 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 404 446 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0052 Glsi-ChrGlsi10 444762 447350 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0052 31 643 U-box Gene Family AT5G42340 65.253 0.0 773