Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0048 ATGGGCCGGGAGGGGAGATTTTTGGAAACGGAATTAATTAAGGAGGAGGAGAATGAGGATGATGAAGAGATGGAGGGAATTAATAAGCAGTTCTTGGGACCGCGTCTGATCTGGGGAGGGAACGGGGAAGAGAAGGATGCAACATCCTCCCTCCCAGTGGGACTAGGGTTTCCTTCAATTAATTATTTCAGAGCAAGAGTTCCTCTGTTGCCTGATTGGGAGATGAGCTGCTTCTCTTGCATTAGTCTTCGCGGGAAGGATGCCAGCAGAGTCCAAATTGACAATGGGAGTGCGAAGGCCAAGGTTGATGCCGATTATGGGGAAGATGGAAGGAAGAGAGGATCCTCCGAGGGGAAGGGGAAGAGTGCCAACTGTCCAAAAAGCAGCGCCGCCCGTAGTTTTACTTTTCGCGAACTTGCAGCGGCTACCAGAGGTTTTAAGGAAGTGAATTTGATTGGGGAAGGGGGTTTTGGAAGGGTTTACAAAGGTCGTCTGGATACAGGCCAGCTTGTTGCTGTTAAACAATTAAATCATAATGGTCAACAAGGTTTTCAGGAATTCATAGTGGAGGTTCTCATGTTAAGCCTGCTACACCATTCTAATCTTGTTACCTTAATTGGTTACTGCACTGATGGAGATCAAAGGCTTTTGGTTTATGAATACATGCCAATGGGTAGCCTCGAAGATCATCTTTTTGATTTAAAACCAGACAAACAGCCGCTAAGTTGGAGTGCTCGGATGAAGATTGCTGTTGGAGCTGCCAGAGGCCTTGAGTACCTCCATTGTAAAGCAAATCCACCTGTTATTTATCGTGACTTGAAATCTGCAAACATCCTATTAGACAATGACTTCAGCCCAAAACTCTCAGATTTTGGGCTTGCTAAACTTGGACCCGTTGGAGACAATACTCATGTTTCAACCAGAGTAATGGGAACATATGGCTACTGCGCCCCGGAGTATGCCATGAGTGGCAAATTAACTCTTAAATCTGATATCTACAGCTTTGGTGTGGTTTTGTTGGAGTTGATTTCTGGACGGAGGGCAATAGATGTCAGTAAGAGACCAGGGGAGCAAAACTTAGTTTCATGGTCTCGCCAGTTTTTAAGGGACCGGAGAAAGTTTGTACAAATGGTTGATCCTCGTCTGGAAGGACACTACCCTTTACGCTGTTTGCATCATGCAATTGCTATCACTGCAATGTGTCTCCAGGAGCAACCAAATTTCCGTCCACTTATTACTGATATTGTCGTTGCACTGGAGTACCTGGTTTCTCAGAGTAACATCCCAGAAGTCCGTAAAGGCAGGCCTAATCACTGCTTAAACATTCATCAAGCACCTGTCACTTGTTTCATGCCATTTCAACCAAATGAGGGGATATTTCCTAGGTACACGATTTCATGTAGAAGTGCCCAATCTTATCTGCGTGTGAAAAGAACCGAGACGAGTCATTGGAAAATAGCATGGTTTCCCCAAGCCCAAACCCATGTGATTGGTTTTCCAAATATTAAATTTGCTATGAGCCAGGCTGGATCTGGATTGTCTTCTCTCTTCTGGTGA 1557 0.4515 MGREGRFLETELIKEEENEDDEEMEGINKQFLGPRLIWGGNGEEKDATSSLPVGLGFPSINYFRARVPLLPDWEMSCFSCISLRGKDASRVQIDNGSAKAKVDADYGEDGRKRGSSEGKGKSANCPKSSAARSFTFRELAAATRGFKEVNLIGEGGFGRVYKGRLDTGQLVAVKQLNHNGQQGFQEFIVEVLMLSLLHHSNLVTLIGYCTDGDQRLLVYEYMPMGSLEDHLFDLKPDKQPLSWSARMKIAVGAARGLEYLHCKANPPVIYRDLKSANILLDNDFSPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELISGRRAIDVSKRPGEQNLVSWSRQFLRDRRKFVQMVDPRLEGHYPLRCLHHAIAITAMCLQEQPNFRPLITDIVVALEYLVSQSNIPEVRKGRPNHCLNIHQAPVTCFMPFQPNEGIFPRYTISCRSAQSYLRVKRTETSHWKIAWFPQAQTHVIGFPNIKFAMSQAGSGLSSLFW 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0048 518 ProSiteProfiles Protein kinase domain profile. 146 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0048 518 Pfam Protein kinase domain 146 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0048 518 SMART serkin_6 146 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0048 518 CDD STKc_IRAK 152 420 - -
Glsi10g0048 518 PANTHER OS07G0668900 PROTEIN 111 428 - -
Glsi10g0048 518 MobiDBLite consensus disorder prediction 102 118 - -
Glsi10g0048 518 ProSitePatterns Protein kinases ATP-binding region signature. 152 174 IPR017441 GO:0005524
Glsi10g0048 518 SUPERFAMILY Protein kinase-like (PK-like) 126 420 IPR011009 -
Glsi10g0048 518 Gene3D Phosphorylase Kinase; domain 1 118 221 - -
Glsi10g0048 518 FunFam Serine/threonine-protein kinase PBS1 222 436 - -
Glsi10g0048 518 Gene3D Transferase(Phosphotransferase) domain 1 222 437 - -
Glsi10g0048 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
Glsi10g0048 518 MobiDBLite consensus disorder prediction 1 25 - -
Glsi10g0048 518 MobiDBLite consensus disorder prediction 102 127 - -
Glsi10g0048 518 FunFam probable serine/threonine-protein kinase RLCKVII 118 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0048 Glsi-ChrGlsi10 405926 411851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0048 75 422 Glycoside Hydrolase AT3G07070 58.708 1.77e-147 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Glsi10g0048 Pkinase 6.6e-47 CL0016