Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0044 ATGAAAGGTGCCAAATCCAAGACTGAATCAAAAAGAGCCAATGCCAAACTCGCCGTTAATAAGAAAGGTAGCGCCGCCACCAAGGCAGGCGGGAAATCGGGTAAGGGCAAGGCAGCGAAAGATCCTAACAAGCCAAAGAGACCTCCCAGTGCCTTCTTCGTCTTCATGGAGGAATTTAGGAAACAGTTCAACAAGGAGCATCCTGACAATAAAGCCGTATCTGCTGTTGGCAAAGCTGCCGGGGCAAAATGGAAGTCCTTGTCTGATGCTGAGAAAGCACCATATGCGGCCAAGGCGGAGAAACGAAAGGCCGAGTATGAGAAGAATATGAAAGCATATAACAAGAGACAGGCTGAAGGTCCCAACGCTGCAGATGAAGAAGAATCGGAAAAGTCAATGTCTGAGGTGAACGACGAGGATGATGGAGATGAGGATGGCAGTGGCGAGGAAGATGATGATGAGTAG 465 0.4882 MKGAKSKTESKRANAKLAVNKKGSAATKAGGKSGKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKEHPDNKAVSAVGKAAGAKWKSLSDAEKAPYAAKAEKRKAEYEKNMKAYNKRQAEGPNAADEEESEKSMSEVNDEDDGDEDGSGEEDDDE 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0044 154 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Glsi10g0044 154 Gene3D High mobility group box domain 30 114 IPR036910 -
Glsi10g0044 154 SMART hmgende2 44 115 IPR009071 -
Glsi10g0044 154 CDD HMG-box_AtHMGB1-like 46 106 - -
Glsi10g0044 154 Coils Coil 96 116 - -
Glsi10g0044 154 MobiDBLite consensus disorder prediction 94 130 - -
Glsi10g0044 154 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 150 IPR031061 -
Glsi10g0044 154 MobiDBLite consensus disorder prediction 1 51 - -
Glsi10g0044 154 MobiDBLite consensus disorder prediction 131 154 - -
Glsi10g0044 154 MobiDBLite consensus disorder prediction 65 154 - -
Glsi10g0044 154 MobiDBLite consensus disorder prediction 1 16 - -
Glsi10g0044 154 Pfam HMG (high mobility group) box 45 114 IPR009071 -
Glsi10g0044 154 SUPERFAMILY HMG-box 33 121 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0044 Glsi-ChrGlsi10 387248 388513 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Glsi10g0044 HMG_box 1.4e-24 CL0114