Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0040 ATGGTTTCTGCAAAACCCGCCGGCACTAAAAACCCTAAAAATGTGTACCACATCGGAGGCCTCCAAGTTGAATTTCCTTACCAGCCGTACGGTTCTCAGTTTGCGTTTATGGGTCGAGTCATCTCCACCCTTAACCGAGCTCAGAAAGAAGGCCATTGTCACGCTTTGCTCGAGTCTCCAACCGGTACTGGCAAATCCCTTTCCCTTCTGTGTTCCTCTCTCGCTTGGCAGCAGAACTATAAATTGCAAAAACAGCATACGAATCTCTCTGACCTTAAGCCCGCTCCGGAGGCAACGACCGATCCTCTTGTCTACGGCGGTGGATTTGTTCCGGATGAGGTTTCCCCAACGTCGGAAAATACGGAGCTGCCAGAATCTGAGGCTAACAACAAGAAGCAGAAGAAAAAGGCCGCACCCACTATATATTACGCTTCGAGGACACACTCACAAATTTCTCAAGTAATTCGTGAATTGCGGAAAACTGCTTACAGGGTGCCTATGGCTGTGTTGGCATCGCGGAAGCATTACTGCACCAACAAGAATATACTTGCCAAAGAGAATATTAATGAAGAATGTAAACTACTTTTGAAAGATCAGGCAGTCGGATGTCCAGAATTCAAAAATGCACATAAAGTCAAAGGTCATCCATCCCTTCAAAGAGGAGGATTTAATGAGGTGCATGATATAGAAGATCTTGTGAAAGTTGGACACTCGGTGAAAGGTTGCTCTTACTATGCTGCTCGTTCCATGTCAGATGATGCACAGTTGGTATTTTGTCCCTACAACTACATTATCAATCCAGTCATTCGGGGAGCAATGGATGTCGACATTAAAGGAGCCATTGTGATTCTTGATGAAGCCCACAATATAGAGGACATCACACGTGATGCTGGTAGTGTTGATATTGAAGAGGACATTTTGGATAAATTGCAATTGGAGCTCCAGCAACTTTGTCCTGTCAATGCTCTGATATACCAACCTTTGTATGAAATGGCACAGGGCCTTACAAGTTGGATAGAACGGACAAAAAATAAACTAGAAAAGCGTGATTTTCAGAATTATGTGTCTTGTTGGACTGGGGATAAGGCTTTAAGAGAGCTCCAAGAAGCAAATATTTCACTGCAGTGCTTCCCTATCTTGCTAGAATGTGCTACCAAGGCAATTAAAGTTGCTTCAGATTTGGAGTCAGATGTACCGCATTTAAGTGGCATGTCAGTGATAACACTGGAAGGCTTATTCTCTTCACTAACTTATTTCTTCTCGAGAAATGGATCTCACATGCTGGATTACCAGCTTGCTCTGCAGCGAAATGCTAGGAAAGATGCTGGAAGGGCTATTGGAAACTGGACGCACACTTTGAGTTTGTGGTGCTTGAATCCAGCAGTTGTATTTAGTGACATTGCCAATCTTTCTTTGTCAGTCATTTTGACTTCTGGGACACTGTCACCAATGAATTCCTTTTCATCTGAGCTTGGAGTTCAATTTGAAACTAGTCTGGAAGCTCCACACGTTATTGATGTCGATTTACAGGTGTGGCCTGCTATAATCTGCACTGGTCCAGGTAATTATCCTTTGAATGCAAGTTATAAAACAGCAGATGGATATACATTCCAGGATGCGGTTGGAAGATCTTTAGAGGAAATCTTCAAGATTGTTCCAGGTGGCTGTCTTGTTTTCTTTCCAAGTTATAAATTGATGGAGAAATTATGCAATCGATGGTCCGAAACAGGTCAATGGTCTCAACTAAATGCAGAAAAGTCCCTTTTCGTTGAGCCAAGAGGAGGAAGCCAAGATGATCTTGAACTTGCTTTAAAGGGGTATTATGATGCAATTAATCATGGCAGTAGACCTACTTTGGGCAGGAAAAGAAGGATTAAGAAGATTTCCCTTAATAATTTCCATGCAGTTGATTCCCCAAAAAATTCTAAGAATCGAGGAGCTGCTTTACTCGGTGTTTGTCGAGGAAAGGTTTCTGAAGGACTTGATTTTTCTGATGATAATGCTAGAGTGGTTATTATAGTAGGCATTCCATTTCCCAACATAAATGATATTCAAGTTGCACTAAAGAAGAAATATAATGACACATACAAGTCATCCAAAAATCTTTTGAGTGGAAATGAGTGGTACTGCCATCAAGCATTCCGAGCTTTGAATCAAGCAGCAGGACGTTGTATACGGCATAGGCTTGATTATGGAGCAGTCATCCTATTGGATGAACGTTTCCGGGAAGAGAGAAATAGAGCCTTCATTTCAAAGTGGCTAAGAAGAACCTTGAGGGTGTATGACAACTTTGACTTGTCTTTGGAGGGATTGAAATCATTCTTTGAGGATGCCAAGGAGCAGTTTGGCATGAATGCCCCACAAAATTTGAGCTTAAACCGGGAATGTGTCCAAATTAAGGATCAGAATAAGGGGTTCACAAGAAAGGCAAATCAGAAATTGAACAATGCTGATAATAGTGGTGAGAAAGAAATTTTGATGATCAAGAATGAAGGCTCTTTCCCCATACTGAGATCTCAAAATCTTGTTGAGAGTCAGACATCAGTGCAAAAGAATAGCAACTCATATAATTGTAAAGACTATTTTGACCCAGAATGCTGCAACCAGGCAGAGTCAAGTTTCAGTGGGGAATTGTCTGTGGCAGTGACACATGAAGAGAACTCCCTCGTCAAGGAAACCCCTTGTATAGATGGAAGCAGTGGGCCTGCTAGCCCTGGTTACTATTCTAAGGATGACTGTTCTAATTCCACCATAATTGAGGTTTCTTCTGAATTACAAGATCAATTATCAATCCTTCCAATTTCTTTAACTAATGGAAGTAAAGCTTCTTCAACAGCTCAGTCTTTAATATCAGTTACTCCTGAAAAGACTGTAACTGCAAACAGCTGCCATATTCTGGAAATAGAATCATCTTTGAATAGGAGTGTTAATTCTCACACTCAGAAAAGGAGAAAGTCCATGGACACACCATTTATAAGCCTTATTGAGGAAGAAAATTATATTGCACCCTGTGCCAGCATTCCTACAAGGTACACCATAAGCTCAAAAGAGGCAACTTTTCAGAAAAATTTGAAGTCAAATCCACCTCAGTCACAGACAAGCAATCTTACTAGTTCATGTTCATCAAATTTTCCTCTCATGGACAAAAGATTGAAGATATTTTGCTCACTCTGCAAAAACCCATTGGGTCGACCTGAGAACCATCTATATGTTACATGCTCGTTGACTTCATCATCAAAATTTCACTTAAGATCTCTTTTGAAACAGAGACTAAAATCTTTCACTGATGATATTTTAAGTGTACCAGTTATTATTACTGGTACTTCATATGTTGATCAACGTATCTGCAGTAAAAATAATGGAAGTGCTCCAGAACAGGGCATTTGGTGCCATGAAGATGGGTGTGTCTTCAGCACTATTTTCTGTCCCTTCTGCAATAACACCAACAATTTGCTTGGAGTACAGATCATGGCAACTAATGCATCAAATAGTCAGTTACTTGACAAGATATTGTTTTACTTGGATTTTTTGGAAGTTAAGGACCTTGAGGAATCAAGGAATGGAGCTTCAGAGGAAGTGGATTTGTTACCAGTTAATGGCTCTGGCGGGGATGAAATTGCTGTCTTGAATTCCATTGAAAAATTTTCTTATCTTCCCCAACTGGAGAAGTCAAGAGTCTGGAAGAGTAGAAAACCAAAGGTCAGAGCTAAGTCACGCTTCAGGCATTGA 3729 0.409 MVSAKPAGTKNPKNVYHIGGLQVEFPYQPYGSQFAFMGRVISTLNRAQKEGHCHALLESPTGTGKSLSLLCSSLAWQQNYKLQKQHTNLSDLKPAPEATTDPLVYGGGFVPDEVSPTSENTELPESEANNKKQKKKAAPTIYYASRTHSQISQVIRELRKTAYRVPMAVLASRKHYCTNKNILAKENINEECKLLLKDQAVGCPEFKNAHKVKGHPSLQRGGFNEVHDIEDLVKVGHSVKGCSYYAARSMSDDAQLVFCPYNYIINPVIRGAMDVDIKGAIVILDEAHNIEDITRDAGSVDIEEDILDKLQLELQQLCPVNALIYQPLYEMAQGLTSWIERTKNKLEKRDFQNYVSCWTGDKALRELQEANISLQCFPILLECATKAIKVASDLESDVPHLSGMSVITLEGLFSSLTYFFSRNGSHMLDYQLALQRNARKDAGRAIGNWTHTLSLWCLNPAVVFSDIANLSLSVILTSGTLSPMNSFSSELGVQFETSLEAPHVIDVDLQVWPAIICTGPGNYPLNASYKTADGYTFQDAVGRSLEEIFKIVPGGCLVFFPSYKLMEKLCNRWSETGQWSQLNAEKSLFVEPRGGSQDDLELALKGYYDAINHGSRPTLGRKRRIKKISLNNFHAVDSPKNSKNRGAALLGVCRGKVSEGLDFSDDNARVVIIVGIPFPNINDIQVALKKKYNDTYKSSKNLLSGNEWYCHQAFRALNQAAGRCIRHRLDYGAVILLDERFREERNRAFISKWLRRTLRVYDNFDLSLEGLKSFFEDAKEQFGMNAPQNLSLNRECVQIKDQNKGFTRKANQKLNNADNSGEKEILMIKNEGSFPILRSQNLVESQTSVQKNSNSYNCKDYFDPECCNQAESSFSGELSVAVTHEENSLVKETPCIDGSSGPASPGYYSKDDCSNSTIIEVSSELQDQLSILPISLTNGSKASSTAQSLISVTPEKTVTANSCHILEIESSLNRSVNSHTQKRRKSMDTPFISLIEEENYIAPCASIPTRYTISSKEATFQKNLKSNPPQSQTSNLTSSCSSNFPLMDKRLKIFCSLCKNPLGRPENHLYVTCSLTSSSKFHLRSLLKQRLKSFTDDILSVPVIITGTSYVDQRICSKNNGSAPEQGIWCHEDGCVFSTIFCPFCNNTNNLLGVQIMATNASNSQLLDKILFYLDFLEVKDLEESRNGASEEVDLLPVNGSGGDEIAVLNSIEKFSYLPQLEKSRVWKSRKPKVRAKSRFRH 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0040 1242 Pfam Helicase C-terminal domain 545 756 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Glsi10g0040 1242 SMART Cxpdneu3 563 743 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Glsi10g0040 1242 Pfam DEAD_2 143 305 IPR010614 GO:0003677|GO:0003678|GO:0005524
Glsi10g0040 1242 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 280 289 IPR002464 -
Glsi10g0040 1242 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 19 358 IPR014013 GO:0005524
Glsi10g0040 1242 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 18 777 IPR045028 -
Glsi10g0040 1242 Gene3D - 522 767 IPR027417 -
Glsi10g0040 1242 SMART deadxpd 21 322 IPR006554 GO:0003678|GO:0016818
Glsi10g0040 1242 FunFam Fanconi anemia group J protein homolog 522 769 - -
Glsi10g0040 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 737 IPR027417 -
Glsi10g0040 1242 CDD SF2_C_XPD 510 741 - -
Glsi10g0040 1242 FunFam Fanconi anemia group J protein-like isoform E 129 339 - -
Glsi10g0040 1242 Gene3D - 29 333 IPR027417 -
Glsi10g0040 1242 MobiDBLite consensus disorder prediction 109 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0040 Glsi-ChrGlsi10 365220 380275 Dispersed/Transposed