Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0037 ATGTCAAAGCTGCTGGATTTGATGGCTGCTAGCTGGGATGGTAGCAATGACATTGGCAGCCAGTCAGACGAGAGTTATTATTTTGACAGGTTGCACATTGAGCCTATGTATGATGCTTTTGTATGTCCTCTGACAAAGCAAGTTATGCGTGATCCTGTTACTTTAGAAAATGGGCTGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGCAAGGAGAGTGGACGGAAACCAGTTTGTCCTTTGACTCTAAAAGAACTAAGAAGCACAGAAATGAATCCCAGTATAGCTTTGCGTAACACCATTGAGGAGTGGACTGCAAGGAATGAAACTGCACAGCTGGATATGGCTTGCAGATCATTGAATATGGGGAGTCCAGAAAATGAAACTCTACAGGCTCTACAGTATGTCCAACACATCTGCCAAAGAAGTCGCTCTAATAAGAATATTGTCCGCAATGCGGGACTTATGCCTATGATTGTTGACATGTTGAAGAGCAGCAGCCGTAAGGTTCGTTGTAAAGCTTTGGAAACCCTTAGAATTGTGGTGGAGGAAGACGACGAAAATAAGGAATTTTTGGCTGAAGGGGACACTGCACGCACAATAGTAAAGTTCCTTTCTCATGAGCTCTCTAAAGAAAGAGAGGAAGCTGTCTCTTTGCTTTATGAGCTCTCAAAATCTGAAACCCTGTGTGAGAAGATAGGTTCAATCAATGGAGCTATTCTAATATTGGTTGGAATGACAAGCAGCAAATCAGAAGATCTTTTGACTGTTGAGAGGGCTGATAAAACATTGGAGAATCTTGAAAAGTTTGAGAATAATGTGAGGCAGATGGCTGTAAATGGTAGACTGCAGCCTCTTCTGACACAGCTTCTTGAAGGTTCACCAGAAACTAAACTGTCCATGGCTGGATACCTTGGTGAGCTGGTTCTGAATAATGATGTGAAGGTCCTTGTTGCTAAAACTGTGGGTTCTTCTCTTATCAATCTAATGAAAAGCAGTAATATGCAGTCAAGAGAAGCTGCATTGAAAGCACTAAATCAGATATCATCGTGTGAGCCTAGCGCCAAGGTTTTGATAGAGGCTGGAATACTTTCTCCTCTTGTCAATGACCTTTTTGCAGTGGGTCCTAATCAGCTTCCCATGCGACTAAAAGAGGTCTCTGCTACAATTCTTGCCAATGTTGTGAACTCAGGAGATGACTTTGATTCCATTTCATTTGGACCTGATCACCAAACTCTGGTGTCTGAGGACATAGTTCATAATCTACTCCATCTTATTAGCAACACTGGTCCAGCTATTGAGTGCAAACTTCTCCAAGTTCTTGTTGGGCTTACTACTTCTCCAACTACTGTTCTGAGTGTTGTTGCTGCTATCAAGAGCTCTGGTGCCACTATCAGTCTTGTTCAATTCATTGAGGCTCCACAAAAAGAATTGCGTGTAGCTTCTATAAAACTCCTTCTGAATCTGTCCACCCACATGGGTCAGGAACTAGCTGATGCACTACGTGGTTCAGTTGGACAGCTTGGTAGTCTAATTAAAGTCATATCAGAAAATATAGGAATCAGTGAAGAGCAGGCAGCAGCTGTTGGCCTTCTAGCAGATCTACCTGAGAGGGATTTGGGGCTCACAAGACAGATGCTAGATGAAGGTGCTTTTCAACTGGTCTATTCTAGGGTGAATGCCATCAGGCAGGGGGAGATCAGAGGTAGCCGCTTTGTGACACCCTTTCTTGAAGGGCTTGTGAAGATTCTTGCAAGGGTTACATATGTCTTGGCTGATGAGCCTGATGCTCTTGCATTCTGCCGTGAGCACAGTCTTGCTGCACTGTTTATTGAACTGCTTCAATCCAATGGACTTGATAATGTACAGATGGTTTCTGCTACAGCTTTAGAGAACCTATCGCAAGAATCCAAAAATTTAACAACATTGCCTGAGGTGCCATCTCCTGGTTGTTGGGCGTCAATCTTTCCATGCTTGAGCAAACAGGCTGTCATAACAGGATTATGTAGACTCCACCGAGGGTTGTGTTCATTAAAAGAAACATTTTGTCTTTTGGAAGGGCAGGCAGTCCGTAAGTTAGTAGCACTACTGGACCACACAAATGTGAATGTGGTTGAGGCAGCACTTGCAGCCTTATCTACTTTGTTAGATGATGGAGTTGATATTGAACAAGGGGTAATGGTGCTGTGTGAGGCTGAGGGAATCAAGCCTATACTTGATGTGTTACTTGAAAAACGAACGGAAAATCTGAGGAGGAGGGCAGTTTGGGCAGTTGAGAGACTATTGCGAACTGATGATATCGCCTATGAAGTTTCTGGAGATCAGAATGTGAGTACTGCACTCGTTGACGCCTTCCAGCATGGTGACTATCGAACTCGACAGATTGCTGAGCGTGCTCTCAAGCATGTTGATAAGATTCCCAACTTCTCAGGAATCTTTCCAAACATCGGATAA 2463 0.434 MSKLLDLMAASWDGSNDIGSQSDESYYFDRLHIEPMYDAFVCPLTKQVMRDPVTLENGLTFEREAIEKWFKECKESGRKPVCPLTLKELRSTEMNPSIALRNTIEEWTARNETAQLDMACRSLNMGSPENETLQALQYVQHICQRSRSNKNIVRNAGLMPMIVDMLKSSSRKVRCKALETLRIVVEEDDENKEFLAEGDTARTIVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSKSEDLLTVERADKTLENLEKFENNVRQMAVNGRLQPLLTQLLEGSPETKLSMAGYLGELVLNNDVKVLVAKTVGSSLINLMKSSNMQSREAALKALNQISSCEPSAKVLIEAGILSPLVNDLFAVGPNQLPMRLKEVSATILANVVNSGDDFDSISFGPDHQTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTTSPTTVLSVVAAIKSSGATISLVQFIEAPQKELRVASIKLLLNLSTHMGQELADALRGSVGQLGSLIKVISENIGISEEQAAAVGLLADLPERDLGLTRQMLDEGAFQLVYSRVNAIRQGEIRGSRFVTPFLEGLVKILARVTYVLADEPDALAFCREHSLAALFIELLQSNGLDNVQMVSATALENLSQESKNLTTLPEVPSPGCWASIFPCLSKQAVITGLCRLHRGLCSLKETFCLLEGQAVRKLVALLDHTNVNVVEAALAALSTLLDDGVDIEQGVMVLCEAEGIKPILDVLLEKRTENLRRRAVWAVERLLRTDDIAYEVSGDQNVSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNIG 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0037 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 116 IPR013083 -
Glsi10g0037 820 SUPERFAMILY ARM repeat 465 808 IPR016024 -
Glsi10g0037 820 SMART arm_5 354 399 IPR000225 GO:0005515
Glsi10g0037 820 SMART arm_5 724 766 IPR000225 GO:0005515
Glsi10g0037 820 SMART arm_5 274 313 IPR000225 GO:0005515
Glsi10g0037 820 SMART arm_5 314 353 IPR000225 GO:0005515
Glsi10g0037 820 SMART arm_5 146 186 IPR000225 GO:0005515
Glsi10g0037 820 SMART arm_5 679 720 IPR000225 GO:0005515
Glsi10g0037 820 SMART arm_5 597 638 IPR000225 GO:0005515
Glsi10g0037 820 Coils Coil 263 283 - -
Glsi10g0037 820 Gene3D - 122 326 IPR011989 -
Glsi10g0037 820 Gene3D - 579 808 IPR011989 -
Glsi10g0037 820 CDD RING-Ubox_PUB 37 94 IPR045210 -
Glsi10g0037 820 Gene3D - 327 494 IPR011989 -
Glsi10g0037 820 SUPERFAMILY RING/U-box 30 116 - -
Glsi10g0037 820 Pfam U-box domain 38 112 IPR003613 GO:0004842|GO:0016567
Glsi10g0037 820 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 25 816 - -
Glsi10g0037 820 SUPERFAMILY ARM repeat 126 451 IPR016024 -
Glsi10g0037 820 ProSiteProfiles U-box domain profile. 35 114 IPR003613 GO:0004842|GO:0016567
Glsi10g0037 820 SMART Ubox_2 39 107 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0037 Glsi-ChrGlsi10 350232 353445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0037 9 820 U-box Gene Family AT1G76390 65.479 0.0 1029