Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0026 ATGAGGTTATCATTCTTGAACGAGCGTAACATAACAAGACAGAACAGGCCTAGGAAACAAGCAGATCCAAAGCAGAACAAGCCAAAAGTTTCCATTCAACTGGTTGCTTACAGTTGGGTTGGCTTCTGGAGAGTGAAGGCCCACAGTGAAGCTTTTAGCCAGGTTACACTAAATATGTTAGCAATAGAAGAGTTGCTGTGTGAACTTAGTGATGAAAAAAGAAACGAGCAAGGTTTGCCGCCGGGTTTTAGGTTTCACCCCACTGATGAAGAACTCATAACTTATTATTTGGCGTCAAAGGTGTTTAGTGGAAGCCACAGTACTGATGTGAAACTTGCAGAGGTTGACCTTAATAGATGTGAGCCATGGGAGCTTCCAGATGTGGCAAAAATGGGAGAGAGAGAGTGGTACTTGTTGAGCTTGAGGGACAGGAAATACCCAAGTGGGTTAAGAACAAACAGAGCAACGGGAGCTGGATACTGGAAGGCTACTGGGAAGGATAGGGAAGTTTACAGTGGGTGGAGTGGAGGCCTAGTTGGGCTGAAGAAGACTCTTGTTTTCTACAAAGGCAGAGCCCCTCGCGGTGACAAGACCAAGTGGGTCATGCACGAGTACCGCTTGGACGGTCACTTTTCCTACCCTCACACCTCTAAGGAGGAGTGGGTCATATGCAGAATATATCATAAATCATCAGGAGAAAAGAGAAATCCAATGCCTCAAGGTGAAGCGGCAAATTTTGCAGTTCTGGATGTCTCCCAACCCCACCTCCTTCCACTACATGCATTCCCTCCTTCCTTCCCCATATTCTTCAACTCCCAGTACCAACACCAGCAACAACAACTTGATGATGCCAACTGTAGCTTGATGGAGAAGCTGACCCCAAATCCAATTGACTACCACAATTGCTTACCTCCCGAGATGGATTCCGGTGCATTGGCCTTATCAGCAGCTTCAAATGCTACATATAGCGACGTGTCTGCTTTAATGGCTTTTGACAGGGCAGCCTTGCCTCGAGAATCTTGGCCTCTTTATTTCATGTAG 1041 0.4649 MRLSFLNERNITRQNRPRKQADPKQNKPKVSIQLVAYSWVGFWRVKAHSEAFSQVTLNMLAIEELLCELSDEKRNEQGLPPGFRFHPTDEELITYYLASKVFSGSHSTDVKLAEVDLNRCEPWELPDVAKMGEREWYLLSLRDRKYPSGLRTNRATGAGYWKATGKDREVYSGWSGGLVGLKKTLVFYKGRAPRGDKTKWVMHEYRLDGHFSYPHTSKEEWVICRIYHKSSGEKRNPMPQGEAANFAVLDVSQPHLLPLHAFPPSFPIFFNSQYQHQQQQLDDANCSLMEKLTPNPIDYHNCLPPEMDSGALALSAASNATYSDVSALMAFDRAALPRESWPLYFM 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0026 346 FunFam NAC domain-containing protein 100-like 88 233 - -
Glsi10g0026 346 ProSiteProfiles NAC domain profile. 79 229 IPR003441 GO:0003677|GO:0006355
Glsi10g0026 346 Pfam No apical meristem (NAM) protein 80 207 IPR003441 GO:0003677|GO:0006355
Glsi10g0026 346 MobiDBLite consensus disorder prediction 1 27 - -
Glsi10g0026 346 SUPERFAMILY NAC domain 71 229 IPR036093 GO:0003677|GO:0006355
Glsi10g0026 346 Gene3D NAC domain 88 233 IPR036093 GO:0003677|GO:0006355
Glsi10g0026 346 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 76 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0026 Glsi-ChrGlsi10 302789 305025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0026 59 236 NAC Transcription Factor Family AT1G76420 73.596 1.94e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi10g0026 NAM 3.1e-37 No_clan