Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0021 ATGGCATACCAGCCGATTCAAGGTCCAAGTTCGGGATCGAGTTCAAGTTCCGGCTTTCAACTGTTCACCTCTCCTTTTGGTGATACCACTTATACCAAGGTTTTTGTTGGGGGATTGGCTTGGGAGACACAGACCGAAACCTTGCGCCGCCACTTCGAACAGTTTGGCGACATTCTTGAAGCCGTCGTTATCACCGATAAGAATACTGGCCGATCTAAAGGCTATGGTTTTGTGACTTTCCGGGATCCTGAGGCTGCTAGGAGAGCATGTGCCGATCCAACTCCAATAATTGATGGTAGGAGGGCAAATTGTAACTTGGCTTCACTTGGGCGACCACGGCCTGCTCTGCCTTATGGACGGTTGAGACCATCATCCCCTTACATAGGAAGTTTGCAACCAACCCGAGGTGCTTACGTTGGAGGCTTTGGATACCAGCAGCCAGTTCCATACAGCTATCAACAAGGATTGGTTTATCCTCCTTATGGGTATACAACATATGGACCTGAATACATCTACCCACAGGGTCTGTATAACCCATATATCGGTCAGCAGTACCTGCAGATATATGGAGGAGTGCCTGGGGCAGTAAATTCAACTATTTATCCTTATGGACAATTGGGTCAAGCTATTCCCAGTGGTCATGGTTTTACATCAATGCAGGGGTATGCAATACCGGGTCATCAGATCATGCCCTATGGTGGAACCAATGTTAATGCAATGACAACTTCGCCTATGCCTACCATTCAAGCACCATACCCTAGTGGAATTGCTGCACCAGTTCCTGGCCAACCACAATTCATTGTTCCTGCTCCTTCTCCTCAGTTTATGCAAGGTAGCGGTCCTGACCAAACAGCTGGGTATCCTTCCCTTGCAAGTTATTTATTTTGCATTCTAGAGGTCATTTATAGTCATGCTCACCAAGCTGTGTCTGAATCGCTCCTGATGGTGAAGGAAAGTGGAAGATGCAGGCTGTGTTTCATGGGGCGTTTACCCTAG 996 0.4769 MAYQPIQGPSSGSSSSSGFQLFTSPFGDTTYTKVFVGGLAWETQTETLRRHFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPALPYGRLRPSSPYIGSLQPTRGAYVGGFGYQQPVPYSYQQGLVYPPYGYTTYGPEYIYPQGLYNPYIGQQYLQIYGGVPGAVNSTIYPYGQLGQAIPSGHGFTSMQGYAIPGHQIMPYGGTNVNAMTTSPMPTIQAPYPSGIAAPVPGQPQFIVPAPSPQFMQGSGPDQTAGYPSLASYLFCILEVIYSHAHQAVSESLLMVKESGRCRLCFMGRLP 331
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0021 331 SUPERFAMILY RNA-binding domain, RBD 31 144 IPR035979 GO:0003676
Glsi10g0021 331 Gene3D - 6 119 IPR012677 -
Glsi10g0021 331 SMART rrm1_1 33 105 IPR000504 GO:0003723
Glsi10g0021 331 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Glsi10g0021 331 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Glsi10g0021 331 PANTHER BOULE-RELATED 9 249 - -
Glsi10g0021 331 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 26 113 - -
Glsi10g0021 331 CDD RRM_RBM24_RBM38_like 32 107 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Glsi10g0021 Glsi-ChrGlsi10 285005 289627 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0021 21 108 C2H2 Transcription Factor Family AT2G19380 42.045 4.30e-16 77.4