Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0008 ATGGAAAAGGTTGCTACACAAATGGCTGCTCCCATTCTCATACACCAATCTCTTTCTAACCGATTTTGTGAGTCTCCTGCCATGGCAAAGAAGCGTGATCTGTCCTATGCATCCGCCCCCAACTTTCTTCACCAACAGTTACAAAACCCTAGCGACAACTGGAACCCAAAGGACTGGGACTGGGACACTGTCAGATTCGTCGCCAAGCCCTTGGACGCTGACATGCTCCGATTGGGAACTCCCATAACCACCGCCAAAGACCAACGCTCTCCAACTGTTACCAACTTCAACAAGAGCTCCGCTATCGATGATGACGAGCGAGAAGAAAGCCTTCGCTTGAATCTCGGGGGTCGCTTGGCCTTCAATACGGTGCAGGAGCCCATGGCGCGCCCTAACAAAAGGCTACGTTCTCGCTCACCGGGTGGACCCTCTTATCCTATGTGTCAGGTAGATAACTGTAAGGAAGATCTCTCCAATGCCAAAGACTATCATCGCCGACATAAAGTTTGTGAGCTTCACAGCAAATCTTCTAAAGCCCTTGTCGCTAACCAAATGCAACGCTTCTGCCAGCAGTGTAGCAGGTTTCACCCTCTGACAGAGTTTGATGAAGGGAAGAGAAGTTGTAGACGTAGGCTAGCCGGGCATAACCGCCGAAGAAGAAAATCTCAACCAGAAGATGTTACCTCCAGGCTTCTTCCCCCCGGAAACCAGGATAATGCAACAACTAGCAATTTGGACATTGTCAACTTGTTGACTTCAATAGCTCGTGCTCAAGGGAAATTTGAGGAAAGAAGCAAAATCTGCTCACAACTTCCACACAGAGACCAGCTCGTTCAGATTCTTAATAGGATAAATTCACTACCTTTGCCAGCTGACCTTGCTGCAAAGTTGCCCAATGCTGGAAATTTTTGTGTCAAAGTTCCTGGGCAAACTTCTTCAGATCCTCATGACAAATTGAACCAGAACAGATCTTCCCCATCAACTATGGACTTGCTAGCTGTTCTTTCAGCCACTCTATCAGCGTCTTCTCCAGATGCCATTGCTGTGCTCTCTCAAAAATGCAGCCACAGTAGTGACAGTGAGAAGTCTAGGACAAGTGGTGTTGACCAAACTTCGGAGCCAAGTTTACAAACTAGACAACCACTAGAATTCACTTCAATTGCAGGAGAAAGAAGTAGTAGCAGTTACCAGTCTCCTGTCGAAGATTCTGATTTCCAGGTTCAAGAGACTCAAATTAATTTACCACTGCAGCTTTTTAGCTTTTCTCCTGAAGATGAAAGCCTGCCAAAATTGCCATCTTCACGGAAGTATTTCTCATCTGACAGTAGTAATCCTGTTGAAGAGAGGTCACCATCATCTTCTCCTTCATTTGTACAGAAGCAGTTTGCTTTGCATAGTGTGACAGAAGGTATCAAGTCTGAGAAAATTTCAATTGGAAAAGTGTTCAATGCACATAAAGAAGCTAGCCAAAGCCGTGCTTGTAACATTTCTCTTGATCTATTTAGAGGGTCAAATAGCAGAGTCCAACCGAGTTCACTGCAAAGTGTTCCATTTCAAGCTGGGTACACATCTTCGGGTTCTGACCATTCACCTCCTAGTTTGAATTCAGATGCTCAGGATCGTACTGGGCGAATAATGTTTAAACTATTTGACAAGGATCCTAGTCATTTCCCAGGAACACTGCGAACACAGATATACAATTGGCTTTCTAATAGCCCATCAGAGATGGAGAGCTACATAAGGCCTGGCTGTGTGATCATATCAGTCTATGTTTCAATGTCTTCGGCTGCCTGGGAGCATCTAGAAGAAAATTTTCTTCAACACGTATATTCTTTAATTCAAAATTCAGATTCTGCTTTTTGGAGAAATGGAAGGTTTCTTGTTCATGCTGGCAGTCAGTTAGCATCACATAAAGATGGAAATATTCGTTTATGCAAAACATGGAGAACATGGAGGTCTCCAGAGTTGATATCTGTGTCCCCTTTGGCAATTGTTGGGGGACAAGAAACCTCTATCTCATTGAAGGGTAGAAATCTGTCAGCTCCTGGCACCAAGATTCATTGCACGAATATGGGTTCTTATGCATCAGAGGAAGTAATAGGGTCTGCTTATTCTGGTATGACATGCGATGAGATAAAATTGGGTGGATTTAAAGTTCACAATGCATCTCCTTGTGTTCTTGGTCGCTGTTACATCGAGGTTGAGAATGGTTTTAAGGGTAACAGTTTTCCAGTGATAATAGCTGATGCAACCATTTGTAAGGAATTGCAAGTACTTGAGTCTGAGTTTGATATGGAGGCAAAATTATGTGATGCCATTGCAGAAGAGCATGCTTATGAGTTTGCGAGGACTGGATCAAGGGAGGAGGCTTTGCACTTTTTGAATGAGCTTGGCTGGCTATTCCAAAGAAAAAAATCCTCGTATGCACGTGAGATTTCAGATTATTCACTTGACAGGTTCAAATTTTTACTCACATTTTCTGTGGAGAGAAACTGTTTAATGTTAGTCAAAACCCTTCTGGATATGCTGGTTGAAAATCACTTGGAAGGGAAATGGTTGTCGAAGGGGTCTGTCGAGATGCTTAATGCAATTCAACTCTTAAACCGGGCAGTGAAAAGAAGGTATACAGACATGGTTGACTTGCTCATCCACTATTCTATACCTAGCAAAAATGACACGTTCAGGAAATATGTTTTTCCGCCGAATCTTGAGGGACCTGGTGGTATTACACCCTTACATTTGGCTGCTTGTTCATCAGGTGCTGAGGGTGTAATTGACTCTTTAACAAATGATCCGCAAGAGATTGGGCTGAAGTGCTGGGAGTCCCTAGTGGATGCAAATGAGCAGACCCCGTATACCTATGCCATGATGAGAAATAATCACTCTTACAACACGCTAATTGCTCGTAAACTTGCTGATAGAGAAAAAGGTGAAGTTTCAGTAACAATTGAAAATGAGATAGAGCAACCATCACTGAGAATTGAGCATAAACCAAGGCCAAATAACCAAGTCGAGCAAGGTCGGAGCTCTTGTGCTATGTGTGCGGTTGCAACAGTGCACTACAAAAGGAGAGTTCTGGGTTCGCAGGGACTGCTTCATCGTCCCTACATTCATTCAGTGCTTGCTATTGCTGCTGTCTGTGTATGTGTTTGTCTATTCTTGCGTGGAGCACCTGACATAGGCTCAGTTGCTCCTTTCAAGTGGGAAAATTTGGATTATGGCACAATATAG 3231 0.4379 MEKVATQMAAPILIHQSLSNRFCESPAMAKKRDLSYASAPNFLHQQLQNPSDNWNPKDWDWDTVRFVAKPLDADMLRLGTPITTAKDQRSPTVTNFNKSSAIDDDEREESLRLNLGGRLAFNTVQEPMARPNKRLRSRSPGGPSYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSSKALVANQMQRFCQQCSRFHPLTEFDEGKRSCRRRLAGHNRRRRKSQPEDVTSRLLPPGNQDNATTSNLDIVNLLTSIARAQGKFEERSKICSQLPHRDQLVQILNRINSLPLPADLAAKLPNAGNFCVKVPGQTSSDPHDKLNQNRSSPSTMDLLAVLSATLSASSPDAIAVLSQKCSHSSDSEKSRTSGVDQTSEPSLQTRQPLEFTSIAGERSSSSYQSPVEDSDFQVQETQINLPLQLFSFSPEDESLPKLPSSRKYFSSDSSNPVEERSPSSSPSFVQKQFALHSVTEGIKSEKISIGKVFNAHKEASQSRACNISLDLFRGSNSRVQPSSLQSVPFQAGYTSSGSDHSPPSLNSDAQDRTGRIMFKLFDKDPSHFPGTLRTQIYNWLSNSPSEMESYIRPGCVIISVYVSMSSAAWEHLEENFLQHVYSLIQNSDSAFWRNGRFLVHAGSQLASHKDGNIRLCKTWRTWRSPELISVSPLAIVGGQETSISLKGRNLSAPGTKIHCTNMGSYASEEVIGSAYSGMTCDEIKLGGFKVHNASPCVLGRCYIEVENGFKGNSFPVIIADATICKELQVLESEFDMEAKLCDAIAEEHAYEFARTGSREEALHFLNELGWLFQRKKSSYAREISDYSLDRFKFLLTFSVERNCLMLVKTLLDMLVENHLEGKWLSKGSVEMLNAIQLLNRAVKRRYTDMVDLLIHYSIPSKNDTFRKYVFPPNLEGPGGITPLHLAACSSGAEGVIDSLTNDPQEIGLKCWESLVDANEQTPYTYAMMRNNHSYNTLIARKLADREKGEVSVTIENEIEQPSLRIEHKPRPNNQVEQGRSSCAMCAVATVHYKRRVLGSQGLLHRPYIHSVLAIAAVCVCVCLFLRGAPDIGSVAPFKWENLDYGTI 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0008 1076 MobiDBLite consensus disorder prediction 425 457 - -
Glsi10g0008 1076 FunFam Squamosa promoter-binding-like protein 14 140 209 - -
Glsi10g0008 1076 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 48 865 IPR044817 GO:0003677
Glsi10g0008 1076 MobiDBLite consensus disorder prediction 519 538 - -
Glsi10g0008 1076 MobiDBLite consensus disorder prediction 433 457 - -
Glsi10g0008 1076 MobiDBLite consensus disorder prediction 364 383 - -
Glsi10g0008 1076 Pfam SBP domain 148 221 IPR004333 GO:0003677
Glsi10g0008 1076 Gene3D - 780 1023 IPR036770 -
Glsi10g0008 1076 MobiDBLite consensus disorder prediction 229 243 - -
Glsi10g0008 1076 SUPERFAMILY Ankyrin repeat 825 973 IPR036770 -
Glsi10g0008 1076 MobiDBLite consensus disorder prediction 352 383 - -
Glsi10g0008 1076 MobiDBLite consensus disorder prediction 212 243 - -
Glsi10g0008 1076 SUPERFAMILY SBT domain 146 226 IPR036893 GO:0003677|GO:0005634
Glsi10g0008 1076 MobiDBLite consensus disorder prediction 306 325 - -
Glsi10g0008 1076 ProSiteProfiles Zinc finger SBP-type profile. 145 222 IPR004333 GO:0003677
Glsi10g0008 1076 Gene3D - 139 209 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0008 Glsi-ChrGlsi10 157027 162351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0008 1 1076 SBP-box Gene Family AT1G20980 53.726 0.0 1046
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi10g0008 SBP 2e-29 No_clan