Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g2126 ATGTTACCCATGCTAGACAATAGTGCTTCTTCTGGTGCACCATCTTCTTCTGATGCTGCTTCCTCAGAAAATTATGGGGTCGTTAACAAAAGAAAAAGAAGACCAGCAGGCACACCAGATCCAGATGCTGAGGTTGTGTCTCTCTCACCCAAGACCTTGCTGGAATCAGACCGATATGTGTGTGAGATCTGCAACCAAGGGTTCCAAAGAGACCAGAATCTCCAGATGCATAGGCGGAGGCATAAAGTGCCATGGAAATTGCTCAAAAGGGAAACGCAGGAGGTGAAGAAGAAGGTGTTTGTTTGCCCAGAGCCAAGCTGTTTGCACCATAACCCGTGCCATGCCCTCGGTGATCTTGTAGGCATCAAGAAGCACTTCAGAAGGAAGCACAGTAATCAGAAGCAGTGGGTGTGCGAGAAGTGCTCCAAAGGCTATGCTGTTCAATCTGATTACAAAGCCCACCTCAAAACCTGTGGTACCAGAGGCCATTCCTGCGACTGCGGCCGTGTGTTTTCCAGGGTGGAGACTTTCATCGAACATCAAGATACCTGCACTGTTCGACAGTTCCGGCCAGAGTTACAATCAACGCACCCTGCAGCCAGCTCTTCTCGAACAGCTTCAAGTACGAGTCCATCTAGTGAGGCCAATCTCAGTATAGCCCCATTGCAAGGCTTGCCGATGCCAAAAACAGCTGAGCATCAACCTGCTTTGTTAACCTCGGAGATACAAAACAATAACCCCAGCGCTACTACTACTACTTCGGATAACCATAAACATAATCTAGAACTTCAGCTCCTACGTTGTTCAGATGCTCGAGGAAAAAGAGATTCTGATGAGGAGAACTACGAAAATGAAACCCATCTGAAGCTTTCAATAGGTTCATGCAGTAATAACAATGAAAGGAATGATTCAGAGAGGCCGTGTTCAGAAACGAAGAATAATAATGGGAAGGAACCTTCACCGAGATTTGAAGTGTCTTGGTTGAAAGAGTTTGCTGGGGAGGAACTGAAGGAGGCCATGGTAGAGAAGGCCTATGCAGAAGAGGCAAGAAGAGAAGCTAAACGTCAAATTGAGAAAGCGGAAGTTGAGTTTGCGAATGCCAAAAGGATAAGGAAACAAGCCCAGGATGAGCTTGAAAAGGCTGAGGCTTTGAAGAAGCAAGCCACGACAAAGATGAGCTCCACCATTATACAGATAACTTGTCAGGCTTGCAAGCAACAGTTCCAATGTTCCACTGTTGGGGTTCCATCATCGGAAGAAACATCCCTTGTAATGAGCTACATGTCCTCAGCCACCACAGAAGGGGAAGGTGAATGA 1317 0.4685 MLPMLDNSASSGAPSSSDAASSENYGVVNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQEVKKKVFVCPEPSCLHHNPCHALGDLVGIKKHFRRKHSNQKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVETFIEHQDTCTVRQFRPELQSTHPAASSSRTASSTSPSSEANLSIAPLQGLPMPKTAEHQPALLTSEIQNNNPSATTTTSDNHKHNLELQLLRCSDARGKRDSDEENYENETHLKLSIGSCSNNNERNDSERPCSETKNNNGKEPSPRFEVSWLKEFAGEELKEAMVEKAYAEEARREAKRQIEKAEVEFANAKRIRKQAQDELEKAEALKKQATTKMSSTIIQITCQACKQQFQCSTVGVPSSEETSLVMSYMSSATTEGEGE 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g2126 438 SUPERFAMILY beta-beta-alpha zinc fingers 58 156 IPR036236 -
Glsi09g2126 438 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 402 IPR031140 -
Glsi09g2126 438 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Glsi09g2126 438 Coils Coil 336 391 - -
Glsi09g2126 438 SMART c2h2final6 136 163 IPR013087 -
Glsi09g2126 438 SMART c2h2final6 59 81 IPR013087 -
Glsi09g2126 438 SMART c2h2final6 100 130 IPR013087 -
Glsi09g2126 438 MobiDBLite consensus disorder prediction 1 46 - -
Glsi09g2126 438 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Glsi09g2126 438 Gene3D Classic Zinc Finger 121 200 - -
Glsi09g2126 438 MobiDBLite consensus disorder prediction 292 321 - -
Glsi09g2126 438 MobiDBLite consensus disorder prediction 8 24 - -
Glsi09g2126 438 FunFam protein indeterminate-domain 12-like 38 106 - -
Glsi09g2126 438 MobiDBLite consensus disorder prediction 195 216 - -
Glsi09g2126 438 Gene3D Classic Zinc Finger 37 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g2126 Glsi-ChrGlsi09 61476716 61479167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g2126 30 438 C2H2 Transcription Factor Family AT2G01940 57.710 1.81e-154 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi09g2126 None None None