Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g2116 ATGAAAGCGGTATCTTTGCTTTGCAAGATTGACCTGATGTGCTCATTCTTTGTTTCTGAAGGAGTTACTGTTGAAGTGGGAACCCCTTCCAATTTGGGATTTTTGGTAATGGATAATGAGGTGCTTGGATTTGGTATTGGGTTGGGAGGAGAAGGAGATGGCCTCGGTGATGATGATGGGGGGGACATTGAGCAACCCATTGATGAGGACGATTTGGCTTATAGCCCTCCTCCTAGCAGTGGTGGTGGAGGTGCTGCTGGTAGTGGTGAAATATATCTTCCTGAGGGGGACCTCTTGGATCTTGAACCTTATGAGAGCATGGAATTCGAGTCTGAGGAGGCTGCCAAGGCTTTCTATAACTCCTATGCTCGTCGTGTTGGGTTCAGTACCCGTGTCAGCTCATCTCGTCGTTCCAGGCGTGATGGAGCTATTATACAGAGGCAGTTTGTTTGCGCAAAGGAGGGGTTCCGCAACTTGAATGAGAAACGCACCAAGGATAGAGAGATCAAGCGCCCACGAACCATTACCAGAGTGGGATGCAAAGCATCTTTGTCTGTGAAAATGCATGATTCTGGCAAGTGGATTGTGTCTGGATTTGTTAGAGAACATAACCATGAACTCGTTCCACCTGATCAGGTACATTGCCTTCGCTCTCACAGGCAAATATCAGGAGCTGCTAAGACGCTGATTGATACTTTACAGGCTGCTGGAATGGGTCCTCGAAGAATTATGTCAGCACTCATTAAAGAGTATGGTGGGATTAGCAAAGTCGGTTTTACAGAGGTTGACTGTAGGAATTACATGAGGAATAATCGCCAGAGAAGTTTGGAAGGGGACATTCAACTTGTTTTAGATTATTTGAGGCAAATGCATGCTGAAAACCCTAATTTCTTCTATGCAGTGCAAGGTGATGAGGATCAGTGCATGAACAATGTCTTCTGGGCTGATCCCAAGGCAAGGATGAACTATACATTTTTTGGTGATACTGTTACTTTTGACACTACTTACCGGTCCAATAGATACCGGCTACCCTTTGCCCCCTTCACTGGTGTGAACCATCATGGACAGCCTGTTCTCTTTGGTTGTGCTTTCCTTATAAATGAATCAGAAGCATCATTTGTATGGCTTTTTAAGACATGGCTTATGGCCATGTCTGGATGCCCTCCAGTGTCAATAACAACTGATCATGATTCTGTAATAAGGTCAGCCATAATTCAAGTATTCCCTGAGACCCGTCACCGTTTTTGCAAGTGGCACATCTTTAAAAAATGTCAGGAGAAGTTATCTCAAATTTTTCTCAAGCATCCTAATTTTGAAGCTGAATTTCACAAATGCGTCAACTTGACTGAGTCAATTGAGGAATTTGAGTCTTGCTGGTTAACACTTGTTGAGAAATATGATCTCAGGGATCATGAATGGCTTCAGGCAATATATACTTCTCGCAGGCAGTGGGTACCTGTATATTTGCGAGACACATTCTTTGCAGAAATGTCCATAACTCAGCGAAGTGATAGCATGAACTCATACTTCGATGGGTATGTGAATGCTTCAACCAATTTAAATCAATTCTTTAAGCTGTATGAAAAAGCACTGGAAAGTCGCAATGAGAAAGAAGTAAAAGCAGATTATGACACAATGAATACTTTGCCAATATTGAGGACCCCATCTCCAATGGAAAAACAAGCATCTGAGCTGTACACTAGAAAAATATTCACAAGGTTCCAAGGAGAGTTAGTTGGGACACTGACATTCATGGCATCCAAGGCCGAGGATGATGGAGAGGTCATCATATATCACGTTGCAAAATTTGGAGAGGACCATAAGGCATACTATGTAAAATTCAATGTTTTGAAGATGAAAGCAACTTGTAGTTGCCAAATGTTTGAATTCTCAGGCCTTCTTTGCAGACATGTTTTGGCTGTCTTTAGAGTAACCAATGTTCTTACTCTCCCATCTCATTACATTTTGAAACGTTGGACAAGAAATGCCAAGAGCAATGTAATATTGGAAGACCATTCTAGTGATGTATATACTTATTATTTGGAATCTCATACAGTTAGATATAATACCCTCCGACATGAGGCCTTCAAATTTGTTGATGAAGGAGCAAAGTCTCTTGAAACATATGAGATGGCAATGGATGCTTTACAAGAAGCTACAAAAAGAGTTGCTGAGACAATAAAAAATGACGGAAGAACTCTCATCAGCAATGGAAAAGTTAGGAGTTGCTTGCTGAATGATGAACGTTGCATAAATTACACAAGTGGGTTCCATGAAGAAAGCTTGGTCCAGCATATGTCCGAGGATGATATGGACAAGAATATTAGAGAACTTGTGAATGAGCTTCAATCTGCAAATCGGAAATGTGAAATTTACCGGTCTAACTTGCTCTCAGTTTTGAAAGCTGTTGAGGATCACAAGTTAGAGTTGTCAGTTACAGTGCAAAACATCAAGATCAGTATGAAAGATGGCCTTTGA 2478 0.4169 MKAVSLLCKIDLMCSFFVSEGVTVEVGTPSNLGFLVMDNEVLGFGIGLGGEGDGLGDDDGGDIEQPIDEDDLAYSPPPSSGGGGAAGSGEIYLPEGDLLDLEPYESMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTITRVGCKASLSVKMHDSGKWIVSGFVREHNHELVPPDQVHCLRSHRQISGAAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLVLDYLRQMHAENPNFFYAVQGDEDQCMNNVFWADPKARMNYTFFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFVWLFKTWLMAMSGCPPVSITTDHDSVIRSAIIQVFPETRHRFCKWHIFKKCQEKLSQIFLKHPNFEAEFHKCVNLTESIEEFESCWLTLVEKYDLRDHEWLQAIYTSRRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYVNASTNLNQFFKLYEKALESRNEKEVKADYDTMNTLPILRTPSPMEKQASELYTRKIFTRFQGELVGTLTFMASKAEDDGEVIIYHVAKFGEDHKAYYVKFNVLKMKATCSCQMFEFSGLLCRHVLAVFRVTNVLTLPSHYILKRWTRNAKSNVILEDHSSDVYTYYLESHTVRYNTLRHEAFKFVDEGAKSLETYEMAMDALQEATKRVAETIKNDGRTLISNGKVRSCLLNDERCINYTSGFHEESLVQHMSEDDMDKNIRELVNELQSANRKCEIYRSNLLSVLKAVEDHKLELSVTVQNIKISMKDGL 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g2116 825 Coils Coil 768 795 - -
Glsi09g2116 825 Pfam MULE transposase domain 330 423 IPR018289 -
Glsi09g2116 825 Pfam SWIM zinc finger 598 644 IPR007527 GO:0008270
Glsi09g2116 825 Coils Coil 709 729 - -
Glsi09g2116 825 MobiDBLite consensus disorder prediction 55 69 - -
Glsi09g2116 825 SMART 26again6 621 648 IPR006564 GO:0008270
Glsi09g2116 825 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 100 724 IPR031052 GO:0006355
Glsi09g2116 825 ProSiteProfiles Zinc finger SWIM-type profile. 610 646 IPR007527 GO:0008270
Glsi09g2116 825 MobiDBLite consensus disorder prediction 54 87 - -
Glsi09g2116 825 Pfam FAR1 DNA-binding domain 118 209 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g2116 Glsi-ChrGlsi09 57520049 57525109 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Glsi09g2116 MULE 6.5e-28 CL0219