LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi09g2113	ATGGCGGCATCTTCTTCATCGGCATCGCTCTTCGGAATCAGAGAAGATGACCAGAATCAGATGAACCAGCAGCATTCCTTGACGACATCGTCCTCAACAGCTCTGGCTGCACCCGCTCAGAAGAGAAAGAGAAATCAACCCGGAACACCAAATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCTTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTCCACAGAAGAGGACACAATCTGCCTTGGAAGCTAAAGCAGAAGACTACCAAAGAGCCAAAGAGAAAGGTTTATTTGTGTCCCGAGCCCACATGCGTCCACCATGACCCTTCAAGGGCTCTGGGTGACCTCACTGGGATTAAGAAGCACTATTCTCGCAAGCATGGGGAGAAGAAGTGGAAATGCGAGAAGTGCTCAAAGAAATATGCTGTTCAATCAGATTGGAAAGCCCATTCAAAGACTTGTGGTACTAGAGAATATAGATGTGACTGTGGCACTCTCTTCTCCAGACGAGACAGCTTCATCACCCACAGGGCCTTTTGCGATGCCTTGGCTCAAGAAAGTGCAAGACAACCGCCCAACCTGAGCACTGCCATTGGAAACCACCTTTTGGGAAGTAGCGGTATGGTGGGTCCTCAGATCTCCTCCATACATGACTACAACAACCAATCTAGTGACATATTGCGATTCGGTGATGGTGTCCGGACCAAGCAATTTAATCACCTTTTCCCGCCATCCCTGGGCTCATCCTTTAGAACTTCACAGCAATCGATGCCCTCTGCATCAACCTTCTTCATGCCAGAATCAAATCAAAGCTACCACCATCAACACCAGCAGCAAAACCAGTCTCAACAAGGGTTGGTGCAAAACAAGCCACTCCATGGACTAATGCAATTGTCTGACCTTCACGACAACGACAACACAAACAATTCCTCATCTGGAGTTAGACTTTTCAACCTTCCCTTCCTTTCCAATAGCAGCACTAACGGCACCATCAATAGCGGCAGCAACAACTCCTTCTCTAAACATTTTGACAATGGCACCGGCGGTGGTGGCGGAGGAGGAGGAGGAGAAGGCAATGAAGGGTCAAGTTTCTTATCTTCAGGTACTATAATAGGTAGTCACCAAACAAGCTCAAATGCCTCTTCTCTTTTCAGCGCATCTCTCCAAAACAACAGCGCCGGCATCTCTCATATGTCCGCAACCGCACTGCTTCAGAAAGCTGCTCAGATTGGTGCAAGTTCTAGCAACAACACTGCCTCACTGCTGAGAACCTTCGGAGGTTCTTCCTCTAGCTGTGGATCCAAATCCGACCCTAGGTCCCCACCACAAGTTACTGCTGCTAACTATGGCGCCATTTTCGGAGGAAACGATCATCAAAACAACCTGCAAGACTTTATGAACTCATTTGCTGCTAGTGGGAGCTCTTACATTTTCGGGAGTGGGTTTAGTGCCTCTGGGTATGAAGGATACGACCATGATTCGAACAGGAACCCAAAACTTCAAACGATGAGCGTTGGAGGCTCTGGAAGGCTAACAAGGGATTTTCTAGGCGTTGGGCAGATAGTGAAAAACATGAGTGGAGGAGGGGTTCCACAAAGAGATCACCAACAACAGCAACAGCATGGGTTCAGCTTGAGCACTTTGGACGAAGAGAGAAATGCTGCGCCGTCAGGCCAATCTTTTGGAGGTGGAGGGAATTTTCAGTGA	1749	0.4831	MAASSSSASLFGIREDDQNQMNQQHSLTTSSSTALAAPAQKRKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLSTAIGNHLLGSSGMVGPQISSIHDYNNQSSDILRFGDGVRTKQFNHLFPPSLGSSFRTSQQSMPSASTFFMPESNQSYHHQHQQQNQSQQGLVQNKPLHGLMQLSDLHDNDNTNNSSSGVRLFNLPFLSNSSTNGTINSGSNNSFSKHFDNGTGGGGGGGGGEGNEGSSFLSSGTIIGSHQTSSNASSLFSASLQNNSAGISHMSATALLQKAAQIGASSSNNTASLLRTFGGSSSSCGSKSDPRSPPQVTAANYGAIFGGNDHQNNLQDFMNSFAASGSSYIFGSGFSASGYEGYDHDSNRNPKLQTMSVGGSGRLTRDFLGVGQIVKNMSGGGVPQRDHQQQQQHGFSLSTLDEERNAAPSGQSFGGGGNFQ	582

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi09g2113	582	MobiDBLite	consensus disorder prediction	1	47	-	-
	Glsi09g2113	582	Pfam	Zinc-finger double-stranded RNA-binding	70	92	IPR022755	-
	Glsi09g2113	582	ProSiteProfiles	Zinc finger C2H2 type domain profile.	70	92	IPR013087	-
	Glsi09g2113	582	MobiDBLite	consensus disorder prediction	544	558	-	-
	Glsi09g2113	582	PANTHER	SERINE/THREONINE-PROTEIN KINASE RIO	19	549	IPR031140	-
	Glsi09g2113	582	MobiDBLite	consensus disorder prediction	1	54	-	-
	Glsi09g2113	582	SUPERFAMILY	beta-beta-alpha zinc fingers	69	166	IPR036236	-
	Glsi09g2113	582	Gene3D	Classic Zinc Finger	49	118	-	-
	Glsi09g2113	582	MobiDBLite	consensus disorder prediction	539	558	-	-
	Glsi09g2113	582	ProSitePatterns	Zinc finger C2H2 type domain signature.	72	92	IPR013087	-
	Glsi09g2113	582	FunFam	protein indeterminate-domain 12-like	49	117	-	-
	Glsi09g2113	582	MobiDBLite	consensus disorder prediction	441	457	-	-
	Glsi09g2113	582	MobiDBLite	consensus disorder prediction	347	384	-	-
	Glsi09g2113	582	MobiDBLite	consensus disorder prediction	441	460	-	-
	Glsi09g2113	582	FunFam	protein indeterminate-domain 5, chloroplastic-like	124	203	-	-
	Glsi09g2113	582	SMART	c2h2final6	146	166	IPR013087	-
	Glsi09g2113	582	SMART	c2h2final6	111	141	IPR013087	-
	Glsi09g2113	582	SMART	c2h2final6	70	92	IPR013087	-
	Glsi09g2113	582	Gene3D	Classic Zinc Finger	124	203	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi09g2113	Glsi-ChrGlsi09	55641520	55645442	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi09g2113	10	543	IDZ Gene Family	AT2G02070	48.148	8.21e-138	412

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Glsi09g2113		zf-C2H2_jaz	3.6e-05	CL0361