Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi09g2111 | ATGGCCGAGCCTCCGTCTCCGCAGCCGGAGCATCCCTTTCCGGAAACCGATACTCTGCAGTACTGGTGCTACCACTGCGACAAGCGTGTATCCATCGAAACACTGCCTAATCTCCCTGACATTCTCTGCTGCGAGTGCAAGCATGGCTTCGTCGAATCGATTCCTCCACCATCTTTGACTCCGCCTTCTGCAACCTCTAATCTGGTTGACGATCCCCGTTTTGGATCGCAATTTCTGCGCTTGCTTCGGCTACTAGCCGAGTCGGCGCGTGACGACGACGCGCCTCCTCCGCCACCACAGAACCGCTCCTCGGGCGATGGTTTTCTTAGGGTTGAGCTTGATGAGTGGGATGAGGACGAGGAAAGCAGCAGCAACAACAACTACGAAGGCCACGAAGATGTCGGGGTGGAGTTCCAAGACGAAGGAGAAGAGCACGAAGGTAACGGAGAGCATGAAGATCGACTGGGAGACGAGGATCCAAGTGGAGACGAATCCGAAGAAGATCTGCGAAGGAGGAGTATGAGGAACCGGATCAGAGACATGACGAGTCGGATCAGAGATTTGGCAACCGGCACTAGGAGCAGGAGGAACCGGATTTTGGATTGGGCTGATATACTAATGGGTCTGGAAGACAATTCTATAGAATTTAGGCTTCAAGTGCCGGAAACTGATCGGTTTTTCGGGAACCCCGGAGATTACGTAGATGCAGCTGATTACGAAGCTCTGCTGCTGACCATGGCGGAAAGTGACGGAAGCGGGAGGAGAGGGGCCCCGCCAGCGGCGAAATCCTTGGTGGAGGCATTGCCAATGGTGGAAATTGTGTCGGAGGAGAAGGCTTTAGTGTGCCCTATATGCAAGGATTTGGTGGGTGTGGGAAACATGGCAAAGAGATTGCCCTGTGGACATCAGTACCATGGGGATTGCATAGTTCCCTGGTTGGGTTCCAGAAATTCATGCCCAGTGTGCAGGTTTGAGTTGCCAACGGATGACCAGGAATATGAGGAAGAAAGGAAGAAGAGGGTGACTGCTACTACTGATTATGGAGCATCTGGTTCGGGTGGAACTGATACGGTGTCAGGTTGA | 1083 | 0.5328 | MAEPPSPQPEHPFPETDTLQYWCYHCDKRVSIETLPNLPDILCCECKHGFVESIPPPSLTPPSATSNLVDDPRFGSQFLRLLRLLAESARDDDAPPPPPQNRSSGDGFLRVELDEWDEDEESSSNNNYEGHEDVGVEFQDEGEEHEGNGEHEDRLGDEDPSGDESEEDLRRRSMRNRIRDMTSRIRDLATGTRSRRNRILDWADILMGLEDNSIEFRLQVPETDRFFGNPGDYVDAADYEALLLTMAESDGSGRRGAPPAAKSLVEALPMVEIVSEEKALVCPICKDLVGVGNMAKRLPCGHQYHGDCIVPWLGSRNSCPVCRFELPTDDQEYEEERKKRVTATTDYGASGSGGTDTVSG | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi09g2111 | 360 | Pfam | zinc-ribbon | 20 | 54 | IPR039525 | GO:0061630 | |
| Glsi09g2111 | 360 | MobiDBLite | consensus disorder prediction | 345 | 360 | - | - | |
| Glsi09g2111 | 360 | Pfam | Ring finger domain | 282 | 323 | IPR001841 | - | |
| Glsi09g2111 | 360 | ProSiteProfiles | Zinc finger RING-type profile. | 282 | 323 | IPR001841 | - | |
| Glsi09g2111 | 360 | MobiDBLite | consensus disorder prediction | 333 | 360 | - | - | |
| Glsi09g2111 | 360 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 248 | 329 | IPR013083 | - | |
| Glsi09g2111 | 360 | MobiDBLite | consensus disorder prediction | 140 | 176 | - | - | |
| Glsi09g2111 | 360 | MobiDBLite | consensus disorder prediction | 141 | 158 | - | - | |
| Glsi09g2111 | 360 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 155 | 327 | - | - | |
| Glsi09g2111 | 360 | SUPERFAMILY | RING/U-box | 277 | 329 | - | - | |
| Glsi09g2111 | 360 | MobiDBLite | consensus disorder prediction | 88 | 107 | - | - | |
| Glsi09g2111 | 360 | FunFam | E3 ubiquitin-protein ligase RING1-like | 245 | 329 | - | - | |
| Glsi09g2111 | 360 | SMART | ring_2 | 282 | 322 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi09g2111 | Glsi-ChrGlsi09 | 54749780 | 54750862 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi09g2111 | 193 | 339 | C3H Transcription Factor Family | AT5G01980 | 48.052 | 1.99e-35 | 133 |