Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g2109 ATGCCATTGGCTGCTCCAAGCTCCCTTTTGAGGGTGGAGGAGATACAAGGGAGAGGGAGGGGAATGGTTGCATCACAACCTCTTAAAGCTGGCCAAGTTGTCCTCAGAGATTCTCCTATCCTTCTTTATTCTGCTTTTCCTTTTATCACACCGCCTTCATCGTCCTTGTCCTCTTCTAGCTTGGCATCATGCTTCTGTGACTACTGCTTCAGAATCCTACCATCATCGTCTTCAGAGGGAGTTCCTTCATCTTCCACAGTTTTGTGCCCTTCATGTTGCCATCACCGTTTTTGTAGCCCAAAGTGCCTATCAATTGCCCGAAATGTGTCCCACTCTTCTTGGGTATGTCAAGCGTTATCTCATCTCCGAGTCAATTCCATACTGCTTGAACAACCCCTGGAGTGCCATGTCCAATTACGTTTTCTCATCGCTGCCTACAATCTGGCAAATGTCTCCCCGTCAGACTTTCAAACTTTGCTTTCTCTTCTGGGTTCTCCTGATAATGCCACCATTGCTGCAGCTCAGTTCCTGCACTCCCTTATTTCATCTCTCTGCACATTTGCTCCAATTAGCCTGCAGAATGAATTTTCTTTGGAACTCACTGCTGTACTGCTGGCCAAGGACAAACTCAATGCATTTGGCTTGATGCAGCCCTTCTCTGAAGATGATGACCTGAGATCTGTCAGAGCTTATGGTATTTACCCCTATGCCTCCTTCTTTAACCATGATTGCCTTCCCAATGCCTGCAGATTTGATTATGTAGACACTAGTGTACCTCGTGACCACGATAACACTGAAATTATAATTAGGATGATTCATGATGCTCCACAAGGTGGGGAGATCTGTTTGAGCTATTTCCCTGTCAATGAAAACTATTCTAGTCGGCAGAAGAGATTGACGGAAGACTATGGCTTCACCTGTAAGTGTGATCGATGTAATATTGAAGCAAATTGGTTGTATAACAACAGTGTTGAAGATGATGTAGAGGATGTAGAAGAGGCAATGGATGAAGACCAATATCAAAATATGGAAACCTCTGACACTGACAATAATCCACAAGGAGAGAATAATGATTTCCCACATGCATATTTCTTTTTGAAATTCATGTGTGATAGAAAAAATTGCTGGGGTACTCTTGCTCCTTTAACCCCAAAGGGGGATACTCCATCTACTGTCATGGAATGTAATGTATGTGGCAACATGAAGAGCGATGATGGCTTTGATGGTTATGGAGGGGAAGATGGAGTTTCCATGGAGCACTGA 1263 0.4402 MPLAAPSSLLRVEEIQGRGRGMVASQPLKAGQVVLRDSPILLYSAFPFITPPSSSLSSSSLASCFCDYCFRILPSSSSEGVPSSSTVLCPSCCHHRFCSPKCLSIARNVSHSSWVCQALSHLRVNSILLEQPLECHVQLRFLIAAYNLANVSPSDFQTLLSLLGSPDNATIAAAQFLHSLISSLCTFAPISLQNEFSLELTAVLLAKDKLNAFGLMQPFSEDDDLRSVRAYGIYPYASFFNHDCLPNACRFDYVDTSVPRDHDNTEIIIRMIHDAPQGGEICLSYFPVNENYSSRQKRLTEDYGFTCKCDRCNIEANWLYNNSVEDDVEDVEEAMDEDQYQNMETSDTDNNPQGENNDFPHAYFFLKFMCDRKNCWGTLAPLTPKGDTPSTVMECNVCGNMKSDDGFDGYGGEDGVSMEH 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g2109 420 Gene3D - 65 125 - -
Glsi09g2109 420 SMART set_7 8 292 IPR001214 GO:0005515
Glsi09g2109 420 CDD SET_SMYD 210 312 - -
Glsi09g2109 420 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 1 408 IPR044238 -
Glsi09g2109 420 ProSiteProfiles SET domain profile. 5 286 IPR001214 GO:0005515
Glsi09g2109 420 SUPERFAMILY SET domain 8 308 IPR046341 -
Glsi09g2109 420 Coils Coil 321 341 - -
Glsi09g2109 420 Gene3D - 130 212 - -
Glsi09g2109 420 Pfam SET domain 19 285 IPR001214 GO:0005515
Glsi09g2109 420 Gene3D SET domain 21 312 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g2109 Glsi-ChrGlsi09 53463212 53464474 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi09g2109 SET 1.3e-11 No_clan