Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g2099 ATGGCTTCCACCGACGGCGGCGATCATGGCGGCGGAACTAAGCCTTTCTTCTGCTACAAATGCGATCGCAGAGTCCATATACCTACCTCCGATTCATCCGACCCATTCTGCCCTCTCTGCTTGCAAGGCTTTCTTGAAGAAGAATTCGAAAACCCTAACCCTAACGCTAACCCTTTTGCGGACCCAGAACCCTCTTTTGGCTTTGACCCTCTATCCTTCCTTCCCCTCCTCTTGTCCTCCGCTTCTCGCTCCAGGAGCCGACATGATTACGTCGATTCGGACATGTTCGACCCTTTTCATTTCCTCCAGAACCACCTTCGAGGTCTTCAGGCTGATGGGGCCAACGTTCAATTCGAGATCAATAATCCTTCTGAACCAGGGTTTCGGCTACCCACCAATATTGGCGATTACTTTCTAGGTCCAGGCCTTGAGCAATTGATTCAGCAGCTCGCGGAGAACGATCCAAATCGTTATGGCACCCCACCTGCCTCGAAATCTGCCATTGAGAATCTTCCAACTATTACTGTCACTGATGATTTGTTGAACTCGGAATTGAACCAGTGTGCAGTTTGTCAGGATGAGTTCGAGAAGGGTTCTCAGGTAAAGCAAATGCCTTGTAAACATGTGTACCATGATGAGTGCTTGCTTCCTTGGCTCGAATTGCATAACTCTTGCCCGGTGTGTCGATATGAGTTGCCCACCGATGACCCAGATTATGAGAACCCAGCACATAGGGCCCAAGGGAATGCTAGTGCGGGTTGGAGATCTGTTGGCAGTGCCAGCGGTAGCGGAGGGGGTAACAGACCTGTTCAGAGGACTTTAAGAATATCTTTGCGGTATCCTTTTGGTTCGCATGGGTCTACTCAGGGGAGTAGTGAAAGGGGATGGGGAAGTATGCAAGAAGATTTGGATTGA 915 0.4995 MASTDGGDHGGGTKPFFCYKCDRRVHIPTSDSSDPFCPLCLQGFLEEEFENPNPNANPFADPEPSFGFDPLSFLPLLLSSASRSRSRHDYVDSDMFDPFHFLQNHLRGLQADGANVQFEINNPSEPGFRLPTNIGDYFLGPGLEQLIQQLAENDPNRYGTPPASKSAIENLPTITVTDDLLNSELNQCAVCQDEFEKGSQVKQMPCKHVYHDECLLPWLELHNSCPVCRYELPTDDPDYENPAHRAQGNASAGWRSVGSASGSGGGNRPVQRTLRISLRYPFGSHGSTQGSSERGWGSMQEDLD 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g2099 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 235 IPR013083 -
Glsi09g2099 304 Pfam zinc-ribbon 16 47 IPR039525 GO:0061630
Glsi09g2099 304 SMART ring_2 188 228 IPR001841 -
Glsi09g2099 304 Pfam Ring finger domain 186 229 IPR001841 -
Glsi09g2099 304 MobiDBLite consensus disorder prediction 282 296 - -
Glsi09g2099 304 FunFam E3 ubiquitin-protein ligase RING1-like 149 235 - -
Glsi09g2099 304 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Glsi09g2099 304 MobiDBLite consensus disorder prediction 239 304 - -
Glsi09g2099 304 SUPERFAMILY RING/U-box 167 237 - -
Glsi09g2099 304 MobiDBLite consensus disorder prediction 252 270 - -
Glsi09g2099 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 26 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g2099 Glsi-ChrGlsi09 51346321 51347235 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g2099 132 240 C3H Transcription Factor Family AT5G01980 47.706 1.91e-32 123