Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g2093 ATGTTCCCCAGGATCAGTATCGGTCGCAACGTACACCACTCTCCCTCTGTACAACGTCACCTTCCCTTTATTCGCGTTCTCTGTTGCGGCAACCAAATCAGACCATGCGTGAATGTGTTGACACATACTGTTGAACTGAACCTTAAGGCTGACAATCTTAGACATATAAAGAATTTGAAACAAAAGCACCTTGAGCAAGACAGAAGGGAGCTATATGGTGATGGCCGGGTAGGAGCTAATTTTGTGACTGTCATGCCTAATGTTTTATCCTCTACAATGGATGGAATTGACAAGCAATTTGGGGTTGCAACCACAGAACACGTCAGTGAATTATATGCTGGGAATGTGACTTGTCAGGTTTATCAACCTGCTGATAATAATGAGAATTTGGTTTCCAACAAGCATGGTCTTTCATTTTTATCAGAGTTACAAGAGTCAGAGGTAAAAATGGAACAAGAAGACAGTAGGGAGAATGGCGAAACTACAGGTTTTGGAAATACATTGGTTGTAGATGATTCTTTAGAGGGAGGTGCTATCTGGGATATTTTTAGGAGACAGGATGTCCCTAAACTGCAGGAATACCTTAAGGAGCACTTTAGAGAATTCAGGCATGTCCACTGCTGTCCATTACAGCAGGTTATTCATCCTGTCCATGATCAGGCCTTTTATTTGACTATGGAGCATAAGAGGAAGTTAAAGGAGGAATACGGAATTGAACCATGGACATTCATTCAGAAACTAGGAGATGCAGTTTTAATTCCAGCTGGCTGTCCTCACCAAGTCAGAAATCTGAAGTCGTGCATTAAGGTTGCCCTTGATTTTGTCTCACCTGAAAGTATAGATGAGTGTTTCCGTTTGACAGAGGAATTCCGCACGCTTCCAATAAATCACAGGGCCTCAGAGGACAAATTGGAGGTGCACCTGAGTGAGCATTGCTTGAATAATGTGGCTGGTGATTTAAAACTTGGAGAAAACCAAAAGTCCACCAAAAAACTTGAGATTAACAAGGCAGTTGTCATTCACTTGTAG 1029 0.4208 MFPRISIGRNVHHSPSVQRHLPFIRVLCCGNQIRPCVNVLTHTVELNLKADNLRHIKNLKQKHLEQDRRELYGDGRVGANFVTVMPNVLSSTMDGIDKQFGVATTEHVSELYAGNVTCQVYQPADNNENLVSNKHGLSFLSELQESEVKMEQEDSRENGETTGFGNTLVVDDSLEGGAIWDIFRRQDVPKLQEYLKEHFREFRHVHCCPLQQVIHPVHDQAFYLTMEHKRKLKEEYGIEPWTFIQKLGDAVLIPAGCPHQVRNLKSCIKVALDFVSPESIDECFRLTEEFRTLPINHRASEDKLEVHLSEHCLNNVAGDLKLGENQKSTKKLEINKAVVIHL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g2093 342 SMART cupin_9 48 291 IPR003347 -
Glsi09g2093 342 ProSiteProfiles JmjC domain profile. 45 291 IPR003347 -
Glsi09g2093 342 SUPERFAMILY Clavaminate synthase-like 175 308 - -
Glsi09g2093 342 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 36 321 IPR045109 GO:0032454|GO:0033169
Glsi09g2093 342 FunFam Transcription factor jumonji (JmjC) domain-containing protein 107 300 - -
Glsi09g2093 342 Gene3D Cupin 27 300 - -
Glsi09g2093 342 Pfam JmjC domain, hydroxylase 172 274 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g2093 Glsi-ChrGlsi09 49658380 49663271 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Glsi09g2093 JmjC 5e-14 CL0029