Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g2078 ATGGTGGTGATCATGCAGCAGCAGCAGAATCCCTCTGCACTAGTGCCACAGCTCAACAATCCTCAGTCCTCCTCTGCCACCAGCAACTCACTTAGGTCACCGCCTTCTGCTACCCCAGCAACCCAGTCCCAGTTATCTTCCCCACTACCTCTTGCACCACTCTCCACGCCGGTTTCCACTCCCTTCCGCCAAACCCTGGTACCATCACTGCCAAGCGACCATGTTATTGGACAGGTGGTGCCCATCACGGCAGCTCACCCATCCGGTGAACCCGCTTTGACGGCGCCGCTGACCTGCCCGTTGGCCAGAGTCCGGCTCTCGGATATTGCCCAGTATGATGGAGCTCCAGCAGGGTCCTACGTCAGAGCAGTGGAAGCCCTGTCTAGGTCTTTGATGAGGCATAATGCAGCGTTGATCGAACTGGGGAGCGAAGATACTTCTCTGATGAGGTGCGGATTGGAAGGTACGAGGTTGTTTTTTAGGAGCAGGGCCCATCCATGCGCTGGGAAGGGAAGCCGTGGGGTTCACATGTACAGGGCAGGAAGGGCTGTGGAAGACTGGGATTCATCTCCCCCATGCATGCTTGATATTTTTAGGTGCATGGGAAGGGCATCTCGTTCTGCTTTGTGTGCTATTGCAAGGCATCTCCGTCTTCGAAGCGATGTTTTTAACCATTTACTTGATGATACGCCATTGCCTGCTAATGAGGTGTCCTCATCAGTTCTTGTTGCTACCTACTCAAATGCTTCTTTGCTAAATGGAAAAAGTGCTATTGGAGGTGGTAAGCCAATGTTGAATGAAGTTGAGAAGGGATTGTTGACATTGATATCTTCAGACACACCTGGTCTTCAGGTATGTGACCCCAATGGCCGTTGGTATCTGGCAGATAGTGGGTCTGGTCCCGGGGATCTTTTGCTGCTAACAGGCAAAGCACTTAGCCATGCTACCGCAGGGCTTCATCCTGCTGCATCATATAGAGCTTCTCCTGATTATTTTCTAGGCACTAATGGTGGAGGAAGGACATCTCTTGCATTTAGACTCATGCCACAAGGCAATGCTATATTGGATTGTTCTCCAATTGCAGCAGCTGGCCATGTTATTCCCCAAAGCTATGTTCCAATATCTGTAAGCCAGTTTATGGATGACCTTTCTGCTGAAGAAGAAGTAATAGGCAGCCGGTCTTATAATACTTATGTAGCTCGAAACAATGTGAATAAGGAACCGTCATTGAGAAGTGTTCTATCTGATCCTTTGTCTGGCGCATTTCTCGAAGATGCCATGCTTGTCTCATGTGGGCATTCGTTTGGTGGTCTTATGCTGAGGAGAGTCATTGAAACTTCAAGATGTACTCTCTGCAATGCAGATGTTGAGACCAGTTCTTTGATCCCTAATTTTGCACTAAGAGCTGCAGCAGTGGCAGTCAAGCACCAGGATGATCGAAGGTTATTTCATAATGCTGTTCTCCGAAAGCGGCGAAAAGAAATGGGTGACCAAATGGATTCATTGAGAAGAGCAAACAGGGAAAATGGAGGTGTTACTGCTGAGGATGGACTCCAACGGGGAGTGCGGTATCCATTTTCAGTAAATGAGAAGGTGATTATTAAGGGTAATAGGAGAACACCAGAAAAATTTGTTGGCAAAGAAGCTGTCATTACCTCTCAGTGTCTTAATGGCTGGTACTTACTCAAGATTATTGGAACTGGGGAGAATGTCCGCCTGCAATACCGTTCTCTTAGGAAGCTATTGAACTCACCGGTGATAGAGGATCAGTGTCGGTCACAGCCAATTCAAAATAGCGGCTCTTGA 1806 0.4845 MVVIMQQQQNPSALVPQLNNPQSSSATSNSLRSPPSATPATQSQLSSPLPLAPLSTPVSTPFRQTLVPSLPSDHVIGQVVPITAAHPSGEPALTAPLTCPLARVRLSDIAQYDGAPAGSYVRAVEALSRSLMRHNAALIELGSEDTSLMRCGLEGTRLFFRSRAHPCAGKGSRGVHMYRAGRAVEDWDSSPPCMLDIFRCMGRASRSALCAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSNASLLNGKSAIGGGKPMLNEVEKGLLTLISSDTPGLQVCDPNGRWYLADSGSGPGDLLLLTGKALSHATAGLHPAASYRASPDYFLGTNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEEEVIGSRSYNTYVARNNVNKEPSLRSVLSDPLSGAFLEDAMLVSCGHSFGGLMLRRVIETSRCTLCNADVETSSLIPNFALRAAAVAVKHQDDRRLFHNAVLRKRRKEMGDQMDSLRRANRENGGVTAEDGLQRGVRYPFSVNEKVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKLLNSPVIEDQCRSQPIQNSGS 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g2078 601 SUPERFAMILY RING/U-box 410 474 - -
Glsi09g2078 601 Coils Coil 485 505 - -
Glsi09g2078 601 MobiDBLite consensus disorder prediction 1 52 - -
Glsi09g2078 601 Gene3D - 181 388 IPR027443 -
Glsi09g2078 601 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 99 587 - -
Glsi09g2078 601 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 409 478 IPR013083 -
Glsi09g2078 601 SUPERFAMILY Clavaminate synthase-like 270 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g2078 Glsi-ChrGlsi09 46496129 46554143 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g2078 410 585 Plant U-box Gene Family AT5G05230 43.258 5.84e-40 148