Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g2068 ATGACTGTAGATGAAGTGGGTAGTAGTAGCTCTGTGTGGAGCAGAGAGCAGGATAAAGCATTTGAAAACGCCCTAGCAACTCATCCTGAGGATGCTTCAGATCGATGGGAGAAGATTGCAGCTGAGGTACCAGGGAAAACTGTAGAAGAGATTAAACAGCACTATGAGCTCTTGGTTGATGACGTTAACCTGATCGAATCTGGTTGTGTGCCTGTCCCATCTTATAATTCTTCTTCAGAGGGTTCAACAAGCCATGCTAGTGATGAAGGAGCTGGCAAGAAGGGTCTTGGGCATTATAGCAGTGAGTCTAATCATGGGACTAAGGCTTCAAGATCAGATCAGGAACGACGAAAGGGTATTGCTTGGACAGAGGATGAACACAGGTTATTTCTTCTTGGCTTGGATAAGTATGGAAAAGGTGACTGGCGAAGTATATCAAGGAACTTTGTGGTAACGAGAACGCCTACACAAGTAGCTAGCCATGCCCAAAAATACTTCATTCGTTTGAACTCGATGAATAAAGATAGAAGAAGATCAAGCATACATGATATCACCAGTGTGAACAATGGAGACATTTCAGCACCTCAAGGACCTATTACTGGACAAACAAATGGTTCTTCTGCACCAAATGCTACAGGAAAATCAGCCAAACAAGCCCCTCAAACTCCGACTGGGTCCCCTGGCGTAGGAATATATGGTGCTCCAACTATTGGGCAGCCTATAGGAGGACCCCTTGTATCTGCAGTTGGAACCCCAGTAAACCTTCCTGCTTCTGCACACATGGCGTATGGTGTCCGAGCACCAGTTCCTGGTGCACCAGTGAACATGGGTCCTATGCCATACCCTATGCCACACTCATCTGCTCACAGGTGA 873 0.4628 MTVDEVGSSSSVWSREQDKAFENALATHPEDASDRWEKIAAEVPGKTVEEIKQHYELLVDDVNLIESGCVPVPSYNSSSEGSTSHASDEGAGKKGLGHYSSESNHGTKASRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDISAPQGPITGQTNGSSAPNATGKSAKQAPQTPTGSPGVGIYGAPTIGQPIGGPLVSAVGTPVNLPASAHMAYGVRAPVPGAPVNMGPMPYPMPHSSAHR 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g2068 290 CDD SANT 121 166 IPR001005 -
Glsi09g2068 290 ProSiteProfiles SANT domain profile. 8 63 IPR017884 -
Glsi09g2068 290 FunFam Transcription factor SRM1 5 72 - -
Glsi09g2068 290 SUPERFAMILY Homeodomain-like 11 67 IPR009057 -
Glsi09g2068 290 ProSiteProfiles Myb-like domain profile. 13 59 IPR001005 -
Glsi09g2068 290 CDD SANT 13 59 IPR001005 -
Glsi09g2068 290 SMART sant 9 61 IPR001005 -
Glsi09g2068 290 SMART sant 118 168 IPR001005 -
Glsi09g2068 290 FunFam transcription factor MYB1R1 120 171 - -
Glsi09g2068 290 Gene3D - 120 172 - -
Glsi09g2068 290 MobiDBLite consensus disorder prediction 176 231 - -
Glsi09g2068 290 MobiDBLite consensus disorder prediction 183 225 - -
Glsi09g2068 290 MobiDBLite consensus disorder prediction 74 119 - -
Glsi09g2068 290 ProSiteProfiles Myb-like domain profile. 114 166 IPR001005 -
Glsi09g2068 290 PANTHER TRANSCRIPTION FACTOR KUA1 9 285 - -
Glsi09g2068 290 ProSiteProfiles SANT domain profile. 122 170 IPR017884 -
Glsi09g2068 290 NCBIfam myb-like DNA-binding domain, SHAQKYF class 118 168 IPR006447 GO:0003677
Glsi09g2068 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 113 170 IPR017930 -
Glsi09g2068 290 Pfam Myb-like DNA-binding domain 121 166 IPR001005 -
Glsi09g2068 290 Pfam Myb-like DNA-binding domain 12 55 IPR001005 -
Glsi09g2068 290 SUPERFAMILY Homeodomain-like 116 171 IPR009057 -
Glsi09g2068 290 Gene3D - 6 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g2068 Glsi-ChrGlsi09 43643185 43662108 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi09g2068 Myb_DNA-binding 6.7e-11 CL0123