Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g2063 ATGGCTACCCTTGGTGTTCCACTACCCTCTAACCTTGCATACAACGAAGCAAGTCCTGAATGGATGAACAAAGCTGACAATGCATGGCAACTTACTGCTGCAACACTAGTTGGCCTGCAAAGTGTTCCAGGGCTCATAATCTTATATGGAGGAGCAGTAAAGAAGAAATGGGCAGTGAACTCAGCGTTCATGTCCCTCTATGCTTTTGCTTGTGTTTTCTTCTGTTGGGTTATATGGGGTTACAGAATGTCATTTGGTGATAGGCTTTTTCCATTCTGGGGAAAGCCTGATATTTCACTGGACCAGAATTATCTTTTTAAACAGGCTTTTCTTGGGTTATTCCCCAATGCCACCATGGTGTATTTCCAGGGAGTTTTTGCTTGCATTACTTTGATTTTGATAGCTGGGGCTGTGTTGGGTCGTATGAACTTTTATGCATGGATGTTATTTGTGCCTTTGTGGCTCACATTCTCCTACACCTTCACAGCATTTAGTATATGGAGTACTAATGGCTTTCTCTCCAAGCTAGGGATAATAGACTACTCTGGTGGATATGTCATACATTTGTCTTCTGGGGTTGCTGGATTCACGGCAGCATATTGGGTTGGTCCTCGCCTAAACAAGGACAGAGAAAGGTTCCCTCCAAACAATATTCTTCTTATGTTAGCTGGGGCAGGTTTATTGTGGATGGGTTGGACAGGCTTCAACGGAGGAGATCCCTATGTAGTGAGCATGGATGCTTCCTTGGCTGTGCTGAATACACATGCATGCACAGCTACTAGCTTGCTCACTTGGGTCATCCTTGATGTCATTTTTTTTCGAAAGCCATCTGTCATTGGAGCTGTTCAAGGCATGATCACTGGTTTGGTTTGCATAACCCCAGCTGCAGGGGTTGTGCAAGGATGGGCAGCACTCATAATGGGGGTTTGTTCAGGCTCAATTCCTTGGTTCACTATGATGGTAGTCCATAAGAGGTCAAAGTTGCTACAAAAGATTGATGACACAATGGCTGTCTTGCACACTCATGCCATTGCTGGAACCCTTGGAGGGATCCTCACAGGCCTCTTTGCTGAACCAAGGCTTAACTTTTTGTTCTATAATGCATATAACCAATATGTTGGCTTGTTTTATGGTATCCATATGAATACAATCAAAACTGGGTTACGACAAATGGGAATCCAACTCCTTGGGATTTTGTTTGTCATCATACTTAATGTCATAAGCACAAGCTTGATCTGTCTCTTTATTCGATTATTGGTTCCGTTAAGGATGTCTGAAGAGGATATGGAGATAGGTGATGAGGCTGCTCATGGTGAAGAAGCTTATGCCATTTGGGGCCAAGGTGATAAGCTTGAAAGTTCTAGTTTAAAGTATGGAAGTTCATTATATGACGATGTTGAAGCAGGGGCAACTAGGAAAAAACGTGTTGCACAAGTTGAGATGACATAG 1449 0.4327 MATLGVPLPSNLAYNEASPEWMNKADNAWQLTAATLVGLQSVPGLIILYGGAVKKKWAVNSAFMSLYAFACVFFCWVIWGYRMSFGDRLFPFWGKPDISLDQNYLFKQAFLGLFPNATMVYFQGVFACITLILIAGAVLGRMNFYAWMLFVPLWLTFSYTFTAFSIWSTNGFLSKLGIIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVVSMDASLAVLNTHACTATSLLTWVILDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAALIMGVCSGSIPWFTMMVVHKRSKLLQKIDDTMAVLHTHAIAGTLGGILTGLFAEPRLNFLFYNAYNQYVGLFYGIHMNTIKTGLRQMGIQLLGILFVIILNVISTSLICLFIRLLVPLRMSEEDMEIGDEAAHGEEAYAIWGQGDKLESSSLKYGSSLYDDVEAGATRKKRVAQVEMT 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g2063 482 FunFam Ammonium transporter 11 445 - -
Glsi09g2063 482 Gene3D Ammonium transporter AmtB like domains 9 446 IPR029020 -
Glsi09g2063 482 Pfam Ammonium Transporter Family 28 442 IPR024041 GO:0008519|GO:0016020|GO:0072488
Glsi09g2063 482 ProSitePatterns Ammonium transporters signature. 180 205 IPR018047 GO:0008519|GO:0016020|GO:0072488
Glsi09g2063 482 PRINTS Rhesus blood group protein signature 219 237 IPR002229 GO:0005886
Glsi09g2063 482 PRINTS Rhesus blood group protein signature 250 272 IPR002229 GO:0005886
Glsi09g2063 482 PRINTS Rhesus blood group protein signature 123 139 IPR002229 GO:0005886
Glsi09g2063 482 SUPERFAMILY Ammonium transporter 21 424 - -
Glsi09g2063 482 PANTHER AMMONIUM TRANSPORTER MEP2 10 453 IPR001905 GO:0008519|GO:0016020|GO:0072488
Glsi09g2063 482 NCBIfam ammonium transporter 26 442 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g2063 Glsi-ChrGlsi09 41813883 41817657 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g2063 117 468 Inorganic Solute Cotransporters AT2G38290 61.648 1.41e-143 414