Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g2059 ATGGGCAAGTCTAGCAAGAAATCAGCTCCCAAAGTTGACGCTGCTCCCGCAGTAGTTCCACCTTCGAAGTCTGCCAAGAAAGGCAAGAGGGAGGCTGAGGATGAACTTGAGAAGCAAGTGACTGCAAAGAAGCGGAAGAGAGATGAGGTTGCTGAGAAGCAAAAGAACGAAGTCAAGGTGAAAGAGAAGGAAGTAAAGGGGCAAAAGAAGAAGGAAGGCAGCTCAGATGATTCCTCTTCAAATTTTGAGGAAGATAAGAAACCTGCTGCAAAAGCTGTTGTTGCTTCAAAGAAATTACCTGCTAAAAATGGGACTTTAAGTACCCAGGCACAGAAAGGCAAGCCAGCTAGCACTTCCAGCTATTCTGGATCCTCAGATGATGATTGTGATGTGGATGATGCTCCAAAATCCAATGTAGCCCCTGCTGAAGGTAAGTATGGACCTTATGCTACAAAGAAGAAAGCTGAATCAAGCTCAGATACTGAGAATAGCTCCTTGGACGAAGATGTAAATGATAAGATCATGTCTGATTTAAAAACAAAGGTAACTACATTGCCTAAGAAGTTACATGCTGGTGCTGATGAGAAAGAATCTGCTAAGAAAATTGAGTCAAGTGAAGCCTCAGACTCAGATTCTGACACCAACTCTGATGAGGACAATGACCAGAAGACACTAACATTGTCGTCCAAAAAGCTGCCTGCTTCTGCAGTTGCTCTAAAGAAGAAAGTTGAGAATGGTGACAACTCAGATGATGAAACAAATGAAAGCCCTGATGAAGGCAACGTTAAAGATGTGGAGATGGTTGATGCTGCTTCAATGGAGACAACAGGAAAGGAAGCTCCTAAAATGGCAGCTACTTCAAAAGAACAAAATGCAACATCAAAGACACTATTCGTTGGAAACTTGTCATATGATGTGGAAAGGGCTGATTTGGAAACTTTCTTTGAAGATTGTGGAGAAGTTGTTGATGTCCGTCTCGCAACAGAGTGGGATGGGAGGTTTAAAGGATTTGGACATGTTGAGTTTGCCACAGAAGAAGCAGCACAAAATGCCCTTAAGTTGAATGGTAATGAACTATTGAGACGTCCTGTCAGACTTGATATAGCCCGTGAAAGGGGTGCATATACCCCCAATAGCAGGAACGACTTATTCCAGAAGAGTGGAAGCGGTCAGTCAACAGTATTTGTGAAGGGTTTTGATACATCATTAGAAGAAGATGAGATAAAAACTAGCCTGGAAAAGCATTTCAGTTCTTGTGGAATGATTTCAAGGATATCACTTCCAAAAGATTATGACACTGGTGTTGCTAAGGGGTATTTTCTTTTGTTTGCTTACTTGGACTTCAAGGATGGTGATAGCTTCAATAAAGCACTAGCACTTAATGGAATTGAGGTTGGTGGTTATCCCTTGTTTGTGGATGAAGCAAGACCTCGATGTCACAATCAAGGTAGAGGTGCCGGTGGAAGGCATGGAGGAGGTCAAAGGGGTCGAGGAAGAGTTGGTGGCAGAAGGTGGCGATGA 1521 0.43 MGKSSKKSAPKVDAAPAVVPPSKSAKKGKREAEDELEKQVTAKKRKRDEVAEKQKNEVKVKEKEVKGQKKKEGSSDDSSSNFEEDKKPAAKAVVASKKLPAKNGTLSTQAQKGKPASTSSYSGSSDDDCDVDDAPKSNVAPAEGKYGPYATKKKAESSSDTENSSLDEDVNDKIMSDLKTKVTTLPKKLHAGADEKESAKKIESSEASDSDSDTNSDEDNDQKTLTLSSKKLPASAVALKKKVENGDNSDDETNESPDEGNVKDVEMVDAASMETTGKEAPKMAATSKEQNATSKTLFVGNLSYDVERADLETFFEDCGEVVDVRLATEWDGRFKGFGHVEFATEEAAQNALKLNGNELLRRPVRLDIARERGAYTPNSRNDLFQKSGSGQSTVFVKGFDTSLEEDEIKTSLEKHFSSCGMISRISLPKDYDTGVAKGYFLLFAYLDFKDGDSFNKALALNGIEVGGYPLFVDEARPRCHNQGRGAGGRHGGGQRGRGRVGGRRWR 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g2059 506 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 389 488 - -
Glsi09g2059 506 MobiDBLite consensus disorder prediction 188 208 - -
Glsi09g2059 506 Coils Coil 29 71 - -
Glsi09g2059 506 SUPERFAMILY RNA-binding domain, RBD 386 504 IPR035979 GO:0003676
Glsi09g2059 506 MobiDBLite consensus disorder prediction 481 506 - -
Glsi09g2059 506 MobiDBLite consensus disorder prediction 1 265 - -
Glsi09g2059 506 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 392 477 IPR000504 GO:0003723
Glsi09g2059 506 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 371 IPR000504 GO:0003723
Glsi09g2059 506 SUPERFAMILY RNA-binding domain, RBD 288 377 IPR035979 GO:0003676
Glsi09g2059 506 MobiDBLite consensus disorder prediction 101 125 - -
Glsi09g2059 506 Gene3D - 263 379 IPR012677 -
Glsi09g2059 506 Gene3D - 380 506 IPR012677 -
Glsi09g2059 506 SMART rrm1_1 296 367 IPR000504 GO:0003723
Glsi09g2059 506 SMART rrm1_1 393 473 IPR000504 GO:0003723
Glsi09g2059 506 MobiDBLite consensus disorder prediction 155 176 - -
Glsi09g2059 506 MobiDBLite consensus disorder prediction 24 92 - -
Glsi09g2059 506 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 394 469 IPR000504 GO:0003723
Glsi09g2059 506 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 364 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g2059 Glsi-ChrGlsi09 41073981 41086655 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g2059 297 462 Eukaryotic Initiation Factors Gene Family AT2G23350 30.636 8.27e-10 59.3