Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g2056 ATGGGGAGGATTAAACCTCAAGCTCTACTACAGCAAAGCAAGAGGAAGAAGGGGCCATCCCGAATAAGTGCCACAACTATTATATTTTACACCTTGATTCTTGTCGTAATTGTGTTTTTCCTGTTCACAACATACGGACATTGGTCTCACAGGTCAAGATTTAGATCAGAGAATCACAGATCAGCCTCTGAGGCTGAAAATTCTTTTGTAGACTCAAAAAAATCTGAGCTACCTGGATATGCTGTTTTAAATACTTCTAAAGGCTCTATATTAATAGAACTTTACAAGGAAAGTGCTCCTGAGGTTGTTGATGAATTCATTGACTTATGTCAAAAGGGGCACTTTAAGGGAATGCTTTTCCACCGTGTAATTAAGCACTATGTGATTCAGGCAGGGGATAAAGGGACAGGAGCTACAGAAGATTGGAATCTGAGAGGAAAGCATTATACAAGTATGAAACATGAAGCATTTATGCTTGGAACTACCAAGGGCAAACACTCGAACCAAAGATTTGATCTTTTCATTACAACTGCACCGATACCAGATCTAAATGAGAAGCTCATTGTATTTGGGCGGGTCATCAAGGGAGAGGATGTTGTTCAGGAAATTGAAGAAGTGGATACAGATGAACATTACCAGCCTAAAATTTCTATTGGAATACTTGATGTGACACTCAAACAGAAGAACTGA 690 0.3928 MGRIKPQALLQQSKRKKGPSRISATTIIFYTLILVVIVFFLFTTYGHWSHRSRFRSENHRSASEAENSFVDSKKSELPGYAVLNTSKGSILIELYKESAPEVVDEFIDLCQKGHFKGMLFHRVIKHYVIQAGDKGTGATEDWNLRGKHYTSMKHEAFMLGTTKGKHSNQRFDLFITTAPIPDLNEKLIVFGRVIKGEDVVQEIEEVDTDEHYQPKISIGILDVTLKQKN 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g2056 229 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 82 223 IPR002130 GO:0000413|GO:0003755
Glsi09g2056 229 CDD cyclophilin 82 222 - -
Glsi09g2056 229 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 1 228 - -
Glsi09g2056 229 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413|GO:0003755
Glsi09g2056 229 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 172 184 IPR002130 GO:0000413|GO:0003755
Glsi09g2056 229 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 185 200 IPR002130 GO:0000413|GO:0003755
Glsi09g2056 229 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 120 132 IPR002130 GO:0000413|GO:0003755
Glsi09g2056 229 SUPERFAMILY Cyclophilin-like 78 225 IPR029000 -
Glsi09g2056 229 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 77 225 IPR002130 GO:0000413|GO:0003755
Glsi09g2056 229 FunFam Peptidyl-prolyl cis-trans isomerase 67 229 - -
Glsi09g2056 229 Gene3D - 65 229 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g2056 Glsi-ChrGlsi09 40282612 40322171 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g2056 79 225 U-box Gene Family AT5G67530 29.870 1.73e-16 76.3