Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g2035 ATGGTAGGTAGAGGATCCGCGAAGTCAAATCCATCACAGGCTAGGAAGAGAGTAGATGCTATTGATTCTCAGGCTGGTTCCGTTCTTGTCCGTGCTAGAGATGGCAGTGCTTTTGCCAAATGTGACGAGTGCAGCAAGAATGTTCCTGTAGCGCTCATCAGTATGCACAGTTGCAGCCTTGAAGCTAAAATTAAAATGAATCTGGGGGCTCAGGTTGTGGAAAAGCCTGCTGAAGCCAAGAAGCCATCAGACAGGAAGAAGCCAAAATCTACAGAACCAAAGGCTAAAAGGGCCAAGGTGGAGAAGGGGATTAAGGGCAAGGATCCTAACAAACCCAAGCGGCCTCCTACAGCCTTTTTTGTCTTCTTGGATGAATTTAGGAAATCTTTTAAGGAAGCAAACCCTGATTCAAAGGATGTTAAAAGGGTTAGTAAAGAGGCGGGTGAGAAGTGGAAGTCTCTGTCTGATGAAGAGAAGCAGCCTTACTTGGATAAAGTTGCTGAACTTAAGGCAGAATATGAGAAGACCTTAGCAAGTTACAATGCTGCTGAAGATGAAGACGAAGATGTGCAAGAGGAGCCTGATAAGGAAGACGTAAGATGCAGCAAAGGAAGTGGAAGAGATCTCTGA 630 0.454 MVGRGSAKSNPSQARKRVDAIDSQAGSVLVRARDGSAFAKCDECSKNVPVALISMHSCSLEAKIKMNLGAQVVEKPAEAKKPSDRKKPKSTEPKAKRAKVEKGIKGKDPNKPKRPPTAFFVFLDEFRKSFKEANPDSKDVKRVSKEAGEKWKSLSDEEKQPYLDKVAELKAEYEKTLASYNAAEDEDEDVQEEPDKEDVRCSKGSGRDL 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g2035 209 Pfam HMG (high mobility group) box 112 181 IPR009071 -
Glsi09g2035 209 MobiDBLite consensus disorder prediction 1 20 - -
Glsi09g2035 209 MobiDBLite consensus disorder prediction 1 17 - -
Glsi09g2035 209 Coils Coil 163 186 - -
Glsi09g2035 209 SMART hmgende2 111 182 IPR009071 -
Glsi09g2035 209 MobiDBLite consensus disorder prediction 179 209 - -
Glsi09g2035 209 MobiDBLite consensus disorder prediction 133 159 - -
Glsi09g2035 209 CDD HMG-box_AtHMGB1-like 113 173 - -
Glsi09g2035 209 SUPERFAMILY HMG-box 99 181 IPR036910 -
Glsi09g2035 209 MobiDBLite consensus disorder prediction 77 112 - -
Glsi09g2035 209 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 112 181 IPR009071 -
Glsi09g2035 209 MobiDBLite consensus disorder prediction 195 209 - -
Glsi09g2035 209 MobiDBLite consensus disorder prediction 74 116 - -
Glsi09g2035 209 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 13 198 - -
Glsi09g2035 209 Gene3D High mobility group box domain 98 181 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g2035 Glsi-ChrGlsi09 35596675 35598373 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Glsi09g2035 HMG_box 1.6e-21 CL0114