Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g2033 ATGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGACCAGATTCTCTAAGAGGAACACAACCGACAGCCATGCTTAGGCTTCCATGCTTTTGTTGGGCACCAAGTTACAAGCACAACATTGACCACCCAAGTGCAAGGCCTCTCAAGGATTTTAAAACCTTTCAAACACATTATAAGAGGAAGCATGGGATCAAACCCTACATGTACAGAAAATGTGGCAAAGCATTTGCAGTGAAAGGTGATTGGAGAACTCATGAGAAGAATTGTGGCAAAATATGGTATTGTCTTTGTGGGTCTGATTTCAGACACAAGAGATCTTTAAAAGACCACATTAAGGCATTTGGCCAGGGCCATGGAGCTTTTGCCATTGATTGCTTGCAAGAGGAAGATGAAGCAGCTTCCGAGATTGAACAAGATGGGGAGAACTCTGTGTGA 441 0.4331 MMHMWGHGSQYRKGPDSLRGTQPTAMLRLPCFCWAPSYKHNIDHPSARPLKDFKTFQTHYKRKHGIKPYMYRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFRHKRSLKDHIKAFGQGHGAFAIDCLQEEDEAASEIEQDGENSV 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g2033 146 Gene3D Classic Zinc Finger 48 122 - -
Glsi09g2033 146 PANTHER ZINC FINGER PROTEIN WIP2 2 142 IPR043584 GO:0003700|GO:0010468
Glsi09g2033 146 FunFam Zinc finger protein WIP2 38 120 - -
Glsi09g2033 146 SUPERFAMILY beta-beta-alpha zinc fingers 53 89 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g2033 Glsi-ChrGlsi09 35233339 35233975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g2033 2 140 C2H2 Transcription Factor Family AT3G57670 81.295 5.15e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi09g2033 None None None