Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g2029 ATGAATAGGTTCCTTAATACGGGAGCTGGAATGGGGTTCAAGGTTGAATTAGTATTTAATGATTTTCTTTCTTGGTTTGCCGAGGAAAGAAAAAAATATTCAGATTCTATGGCTCAGCTGGAGTGTATATATATTAGTTCATCAGACGATGACCTGGAGCTTGAGGAGATCGAAAACCCAAATTATAGGAATCTCCCAGGATGGGCTGCTAGTGGAAGTAATTCTGTTTATGGTAGAGGGCCTAAGCAAGATAGTTCTTCTAAATGGGAAAATACTTCGAATGCAAGCTCTTCTACTGCTTATAATCATTCACAAGTCAAGCACTGTACTCAACCTGGATCCAGCAACAATGTGTTGAATTGCAGAGATGCACATGATGAGTCTTTCAATTTTGCAGAGAATGGAAGCACAAGTCAGCTTCGGACAGTCAGTTTCCAGAATGCTAATACTTCGGGTGCTGATTATGAGAAAATGCCATCCCAACAAACTTCAAGGGCGCTTCCATCAACAAGGCCTATTCTATCTTCTCTTCAGTCATTTGCACCAGATACTAGATTAAACAACATAAAAGATAGCATGAGCAGAAGTCAGATTCATGATACATATGGGAATCCTCACCATGTAGCAGGACCTAGCAAGAACATTTACAAGGGCTATATGCGTGATAATTATAGCAGGGGAAATGATGAACGTGTCATGTATCAAAATGGTGGGATTAGGATTCTTCCTCCAACTTTGATGCATGGAAAATCCATCCCTGTTACCCATTTAGCTAGTTCGAGTGAATCTACATACCATTCTGGAGTAGGTGAAGAAAAGGCTTCTGGAAATGACGAGAGACTAATTTATCAGGCAGCATTGGAGGATCAATTTTCTTGCTTAATAAGTGTTGATCTCCTTGTAAATGGTGGACATCAAGTTGTTAGAGTTTTATCTTTAGAATTGAGGGATCTCAATCAGCCAAAAGTTGAAGCTAATTTACCTGATGGTCTATTGTCTGTGTCTCTTCTGAGACATCAGAAAATTGCATTGGCATGGATGCTTCAGAAGGAAACCAGAAGTTTGCATTGCTTGGGGGGAATTCTAGCTGACGATCAGGGTCTTGGAAAGACAATTTCGATGATTGCCCTCGTTCAAATGCAGAGGTCATTGCAGTCCAAATCAAGAACAGATGATGCATGCAATCATAAAACTGAAGCATTGAATTTGGATGAGGATGATGATCATGGCAGTGCTTATGTGGAAAAATCTAAAAAGAATGAAGAATTTGACGATATGAAACCTATTCCGGAATCAGCTAGTTCAACACGGGTACCAGGTAGGAAAAGGCCAGCTGCAGGTACACTAGTTGTCTGTCCTGCTAGTGTTCTCCGACAGTGGGCAAGGGAGCTTGATGACAAAGTTGGAGATGAAGCCAAGCTTTCTGTATTGGTTTATCATGGGGGCAATAGGACAAAGGATCCTGTTGAACTTGCAAAATATGATGTTGTTCTCACAACATATTCTATTGTAACTAATGAGGTTCCAAAGCAACCTTTAGTTGAAGAGGATGAGATTGATGAAAAAAATGGGGAAAATATCGGGTTATCCTCTGAGTTTGCTGTCAGTAAAAAGAGGAAAAAGACAAATAATGCAAGGAAAAGGAATAAAAAGGGTAAAAATGGAATTGACAGTTCTATCGATTATGCTTCTGGTCCTCTTGCAAGAGTTGGTTGGTTTAGGGTCATTCTAGATGAAGCTCAAACGATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTCGGGCCAAAAGAAGATGGTGCTTATCTGGAACACCTATTCAAAATACGATTGACGATTTGTATAGCTACTTCAGATTCCTGAAGTATGATCCTTATGCTGTATATAAATCCTTCTACAATACAATAAAAATTCCAATATCCAAAAATTCCATCCAGGGTTACAAGAAACTTCAAGCAGTTCTGAGGGCTATAATGCTACGCCGTACAAAAGGCACATTGATTGATGGGGAACCTATAATCAATTTGCCCCCTAAAACAATTCAGCTGAATAAGGTGGATTTCTCCATTGAGGAGCGTGCCTTCTACACCAAGTTGGAAGCAGATTCACGTACTCAATTTAAGGCATATGCTGCTGCGGGTACAGTCAATCAAAACTATGCAAATATTCTTTTAATGCTGTTACGTCTGCGTCAGGCTTGTGACCACCCGCTTCTTGTTAAAGATTATAATTCCGACTTTGTTGGGGAAAATTCTGTAGAAATGGCAAAAACGCTTCCAAGGGAGATGCTGATTAATCTCTTCAATTGTTTGGAAACATCCTTTGCCATATGTAGTGTTTGCAATGATCCACCTGAAGACCCTGTTGTTACTATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCAGAATATATGACGGGGTATGATAATATGTGCCCAGCAGTTGATTGTAGACAACAAATTGGTGATGATGTTGTTTTCTCCAAATCTACTTTAAGAAGCTGCATCTCCGGTGATCTTGGGGATGGTAGTTCTTCAAATTCTCGTCTTGTTGATTATTCAGCAGTACAGCAGAGTAATTACAGTTCATCTAAAATCGCAGCGGTCCTTGAGATTCTGCAATTTCATTGTAAATTAAAGATTCCAGGAAACTATTCAGAGTCCACAACTGAAGGACCGATAAAGGCTATTGTTTTTTCCCAGTGGACTAGCATGTTGGACTTAGTTGAGAGATCATTGAACAAGTATTGTATTCAATACAGGAGACTTGATGGTACCATGACTCTGGTTGCAAGGGATAAAGCTGTTAAGGATTTCAATACTGATCCCGAGGTAACTGTTATGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAACTTGGTTGCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACTACTGAAGACCAAGCTGTTGATCGAGCTCATAGAATTGGGCAAACCCATCCTGTTACTGTAACGCGGCTCACTGTAAAAAATACAGTTGAAGATCGAATATTGGCTCTTCAGGAAGAAAAGAGAAAAATGGTTGCATCTGCTTTTGGTGAAGATCAAGCTGGTGGTTCTGCAACTCGCCTTACTGTCGATGATCTAAAATATCTTTTCATGGTCTAA 3159 0.3995 MNRFLNTGAGMGFKVELVFNDFLSWFAEERKKYSDSMAQLECIYISSSDDDLELEEIENPNYRNLPGWAASGSNSVYGRGPKQDSSSKWENTSNASSSTAYNHSQVKHCTQPGSSNNVLNCRDAHDESFNFAENGSTSQLRTVSFQNANTSGADYEKMPSQQTSRALPSTRPILSSLQSFAPDTRLNNIKDSMSRSQIHDTYGNPHHVAGPSKNIYKGYMRDNYSRGNDERVMYQNGGIRILPPTLMHGKSIPVTHLASSSESTYHSGVGEEKASGNDERLIYQAALEDQFSCLISVDLLVNGGHQVVRVLSLELRDLNQPKVEANLPDGLLSVSLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISMIALVQMQRSLQSKSRTDDACNHKTEALNLDEDDDHGSAYVEKSKKNEEFDDMKPIPESASSTRVPGRKRPAAGTLVVCPASVLRQWARELDDKVGDEAKLSVLVYHGGNRTKDPVELAKYDVVLTTYSIVTNEVPKQPLVEEDEIDEKNGENIGLSSEFAVSKKRKKTNNARKRNKKGKNGIDSSIDYASGPLARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKIPISKNSIQGYKKLQAVLRAIMLRRTKGTLIDGEPIINLPPKTIQLNKVDFSIEERAFYTKLEADSRTQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYNSDFVGENSVEMAKTLPREMLINLFNCLETSFAICSVCNDPPEDPVVTMCGHVFCYQCVSEYMTGYDNMCPAVDCRQQIGDDVVFSKSTLRSCISGDLGDGSSSNSRLVDYSAVQQSNYSSSKIAAVLEILQFHCKLKIPGNYSESTTEGPIKAIVFSQWTSMLDLVERSLNKYCIQYRRLDGTMTLVARDKAVKDFNTDPEVTVMLMSLKAGNLGLNLVAACHVILLDLWWNPTTEDQAVDRAHRIGQTHPVTVTRLTVKNTVEDRILALQEEKRKMVASAFGEDQAGGSATRLTVDDLKYLFMV 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g2029 1052 CDD SF2_C_SNF 867 1004 - -
Glsi09g2029 1052 Gene3D - 680 1051 IPR027417 -
Glsi09g2029 1052 MobiDBLite consensus disorder prediction 73 111 - -
Glsi09g2029 1052 ProSitePatterns Zinc finger RING-type signature. 796 805 IPR017907 -
Glsi09g2029 1052 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 351 627 IPR014001 -
Glsi09g2029 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 673 1051 IPR027417 -
Glsi09g2029 1052 Pfam Zinc finger, C3HC4 type (RING finger) 780 825 - -
Glsi09g2029 1052 SMART ultradead3 332 644 IPR014001 -
Glsi09g2029 1052 Gene3D - 432 521 IPR038718 -
Glsi09g2029 1052 Pfam SNF2-related domain 339 742 IPR000330 GO:0005524|GO:0140658
Glsi09g2029 1052 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 429 517 - -
Glsi09g2029 1052 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 772 863 IPR013083 -
Glsi09g2029 1052 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 86 1051 - -
Glsi09g2029 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 665 IPR027417 -
Glsi09g2029 1052 CDD DEXDc_SHPRH-like 336 665 - -
Glsi09g2029 1052 MobiDBLite consensus disorder prediction 416 442 - -
Glsi09g2029 1052 SUPERFAMILY RING/U-box 777 836 - -
Glsi09g2029 1052 Pfam Helicase conserved C-terminal domain 895 994 IPR001650 -
Glsi09g2029 1052 ProSiteProfiles Zinc finger RING-type profile. 781 817 IPR001841 -
Glsi09g2029 1052 Gene3D - 531 676 IPR038718 -
Glsi09g2029 1052 Gene3D - 309 399 IPR038718 -
Glsi09g2029 1052 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 545 677 - -
Glsi09g2029 1052 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 884 1047 IPR001650 -
Glsi09g2029 1052 SMART ring_2 781 819 IPR001841 -
Glsi09g2029 1052 SMART helicmild6 911 994 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g2029 Glsi-ChrGlsi09 34597824 34634215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g2029 47 952 RAD5 or RAD16-like Gene Family AT1G50410 53.292 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi09g2029 SNF2_N 2.8e-68 CL0023