Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g2018 ATGGTAGCTGGGGCGCAGCAACAACCACAACCTCAATCACAGCAGCTGACTCAGCAATCTACACCCTCTGCGCAAGATGAGGCCTTGAAGAGGAACACGGATTGCGTCTACTTTCTTGCCTCTCCCTTGACATGCAAAAAGGGAAGTGAATGTGAATACCGCCATAGTGAGTATGCTCGGGTTAATCCTCGGGATTGTTGGTATTGGTTGAATGGCAATTGCTTGAATCCCAAATGTCCCTTCCGTCATCCGCCTCTTGAAGGTCTCTTAATGCCACAGGCAGCCACTGCTGGTGGATCATCTGCACCCCCATCTCAGATTGCACCAACTTCTGCAGCAAATGCACCTTATAATTCTAGTAAACAAGCTGTCCCTTGCATCTTCTTCCAAAACGGCCTTTGCTTAAAAGGTGACAGATGTGCCTTCTTTCATGGACCATATCCTAACACTGGTAATAAAGTTCCTCAGGTCCAGGTGACCAACCTGGGTACCGAGCCTCCAAGTTTTAAGAAGGGTTTTGGTGGCCTTGAAAAATCTACGAAGGAAAGGAAAATTTCCCAAGAAAATGTTGCAAAGTCACTTGGAGGTTTTGAAGCTAAATCTACCCTAAAAGTTGAAACTGCTTCACAAAGAAATGTAGTTGGCATGGAGATACATGCATCACCACCTGTGGGATCTGACAATGAGGCTTCTAGGTTCAAGGTAACAAATACTCCACCTGTTACCAATGGAGCCCTTGTTGCTAAGCCTAGCCATCTGCATCAGTCTCAGATGTTAGATGATCATAGTTTACATAATGGTAAGGAAAGTGACGAGTTTTTTAGAGAATCCTCTCCTGGCTTTGATGTTCTTGTAGCTGATGAACTTAGGAATTCGGATTACTACAATAGAGAAGATCAATTTGGAAAAGCAAGAGGTCGAGATGGAATGAACTTGGACTCTGTGAATGAATATGATTTAAGACATCCTATGGATTATAAATCAGTAGCTGATATTGATCAAGAGCAATATTCTGGGCCCCAAGGTTATGACTCATATGATCACATGCAAGAGACATTTGTATGGGATCAGCATAGGAATTCATCTGAAATAATATTCAGGGCACCAACACATGCAGAAAGGATTACTCACCGCAGATCTAACAGTCCTGAAAATGGTGAGGTCGCAGATCTCCGACATCATTTATCCAAGCGGAGGAGGGTCAATGGTTTGAAATCTGTTGTCCATCATGATTATTCCTTTAAGAGCCATGATGATGAGCAAGGTCATCGGTTCTCCTCACGAAAGGATTTACTCCAGTTACCTCTCAATGAGAGCTCCCTCAGTAATCGCTTCCGAGGCAGGATAAAGCTTCCAGCAAATGGTGGTGATGACCACTTGGATAGGGAATTGGACAAAGGAAGAAATAGAAGCACATTGTCGCCTGGCACTATGCAAACTTCTCGCCAGGGAAGGTATCAAGATAAATTAAGAGGAAGAGTGCAAGAAGATTATGAGAGGAAAAACTTCCGGGATCGACCTATGAGGAAAGAAATAATTGGGGACCAAAACACTGATTTTGCTGGACCAAAAAGTCTTGCTGAACTGAAATTTGGAAAGAGCAATGAATATAAGGAGCAACAATTCCTTGGGAAGAAAAAAAGTTTAATGCAACAACAACAATCTGAAGGTGATTTTCTTTTTGAAGGTCCAAAACCTCTTAGTGAGATTCTGAAGGAGAAGAGAGCAGCTGGAGCTGGAGCTGAAGCAGCTTCCAAGAGTAGCAAATTATCTGAGAATAAAGGGGACAAGAAGGATAGAGAAATTACAAATGGCTTAGAATATACTTCTGTCACAGACATACAAACTGGCACTTTACCCGAAACTAAGGAAGATGTTAAGAACTGCATGTTACTTAATGAGGGAGAGTCCAAGTTTCAGGAGACTGATGCAGTTGGGAGTGATGTTGATAAAATTGATGAAACTCATGGTCAGTCATCTGAAGACGGACTGATTTATGATGAAGCTACAGAAGACCAGGAGTTTGAAGGTGATGATCAGAAGGATGGGGATTATGATTATGAGCAAGTCGACGAGGGGGACTATAATTTTGATGAAGTTGAAAATCCAGAACAGGAAGAATACATGGATGATGAAGATGGGGATGACTTTGCTAAGAAGATTGGTGTCGTGCTTACATGA 2181 0.4255 MVAGAQQQPQPQSQQLTQQSTPSAQDEALKRNTDCVYFLASPLTCKKGSECEYRHSEYARVNPRDCWYWLNGNCLNPKCPFRHPPLEGLLMPQAATAGGSSAPPSQIAPTSAANAPYNSSKQAVPCIFFQNGLCLKGDRCAFFHGPYPNTGNKVPQVQVTNLGTEPPSFKKGFGGLEKSTKERKISQENVAKSLGGFEAKSTLKVETASQRNVVGMEIHASPPVGSDNEASRFKVTNTPPVTNGALVAKPSHLHQSQMLDDHSLHNGKESDEFFRESSPGFDVLVADELRNSDYYNREDQFGKARGRDGMNLDSVNEYDLRHPMDYKSVADIDQEQYSGPQGYDSYDHMQETFVWDQHRNSSEIIFRAPTHAERITHRRSNSPENGEVADLRHHLSKRRRVNGLKSVVHHDYSFKSHDDEQGHRFSSRKDLLQLPLNESSLSNRFRGRIKLPANGGDDHLDRELDKGRNRSTLSPGTMQTSRQGRYQDKLRGRVQEDYERKNFRDRPMRKEIIGDQNTDFAGPKSLAELKFGKSNEYKEQQFLGKKKSLMQQQQSEGDFLFEGPKPLSEILKEKRAAGAGAEAASKSSKLSENKGDKKDREITNGLEYTSVTDIQTGTLPETKEDVKNCMLLNEGESKFQETDAVGSDVDKIDETHGQSSEDGLIYDEATEDQEFEGDDQKDGDYDYEQVDEGDYNFDEVENPEQEEYMDDEDGDDFAKKIGVVLT 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g2018 726 MobiDBLite consensus disorder prediction 447 495 - -
Glsi09g2018 726 MobiDBLite consensus disorder prediction 574 606 - -
Glsi09g2018 726 FunFam Zinc finger CCCH domain-containing protein 17 23 86 - -
Glsi09g2018 726 ProSiteProfiles Zinc finger C3H1-type profile. 120 147 IPR000571 GO:0046872
Glsi09g2018 726 MobiDBLite consensus disorder prediction 589 604 - -
Glsi09g2018 726 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 26 724 - -
Glsi09g2018 726 MobiDBLite consensus disorder prediction 470 485 - -
Glsi09g2018 726 MobiDBLite consensus disorder prediction 451 469 - -
Glsi09g2018 726 MobiDBLite consensus disorder prediction 641 661 - -
Glsi09g2018 726 Pfam Zinc-finger containing family 30 84 IPR041686 -
Glsi09g2018 726 ProSiteProfiles Zinc finger C3H1-type profile. 60 86 IPR000571 GO:0046872
Glsi09g2018 726 MobiDBLite consensus disorder prediction 665 700 - -
Glsi09g2018 726 SMART c3hfinal6 120 146 IPR000571 GO:0046872
Glsi09g2018 726 SMART c3hfinal6 30 57 IPR000571 GO:0046872
Glsi09g2018 726 SMART c3hfinal6 62 85 IPR000571 GO:0046872
Glsi09g2018 726 ProSiteProfiles Zinc finger C3H1-type profile. 29 58 IPR000571 GO:0046872
Glsi09g2018 726 SUPERFAMILY CCCH zinc finger 121 145 IPR036855 GO:0046872
Glsi09g2018 726 Pfam RNA-binding, Nab2-type zinc finger 125 145 - -
Glsi09g2018 726 MobiDBLite consensus disorder prediction 634 700 - -
Glsi09g2018 726 MobiDBLite consensus disorder prediction 1 25 - -
Glsi09g2018 726 Gene3D - 18 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g2018 Glsi-ChrGlsi09 32809776 32813269 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi09g2018 zf-CCCH_3 3.9e-11 CL0537