Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g2014 ATGGTTTCTCATTGTCTCCGGCGGAATGTTATCCGTTTCTTCAAGATTATTCTTAAAAGTACTCTTCAAGAAGGCAAGCTCTATTCTCAGAAAGTCCCAAATAATTTTATAAGGAAATATGGAGCTGGTCTGTCAAATCCTGTGTTTCTCAAGCCTCCAGATGGCACTGAATGGGAAGTTTATTGGACAAAACATGATGGTGAGGTTTGGTTTGAGAAAGGTTGGAAACAACTTGCTAAATATTACTCACTAGGTCATGGGCATTTGTTGATGTTCAAATATGTGGGAACATGTCATTTTGAGGTATACATATTTGATATGAGTGCCCTAGAAATAGACTATCCTCTCCATGGCACACATGATAAAAAGGACAAACTTGAACAGATTAGAGATTATTCAATTGAAATTCTGGATGAAATATCTCAGAAAGAAAGACCAAAGTCCCCATCATCATCTCTTTGCCCTTACAAGAAAACAAGAAATAGTACAAGTCGAGGAGCTGAAAGAACCTCCAATCTCAAAAACTTGCATCAGGGTGTGCAGATTCAAGATAGTCTAAATGAAGGTGAAGGGAAAAAGTTTGAGAAGTCAAAGGATGCAGAACTGAATTCTATCAATCAAGAATCAGAAGAAGACATAGGTAGAAGCAAGTTTTCCACTATAAAATACCCAAATTCCAAGGCTATTACTCCCAGGAAGAAACCGTTAACTGTTATTGAAAAGGCCAAAGCTTTACAGAGAGTCAGTACTTTCATGTCTAAGAATCCCTATTTCAAGATTGCCATGCAGCCATCATACATATTTAAGAGAACCTTGAGTGTACCAGCAAAGTTTGCAAAACATTATTTGAAGAAGAAGAAGGAAGGAGATGTCCTCCTCCAGGTTTTGGATGGGAGAACTTGGTGTGCTAAGTATAGTGTTTGTCTAGGAGGAAGTAAACAGAAGTTTAAAATCAGTTGTGGCTGGAACTTATTTGCGAAAGACAATAACTTGAAAGTGGGTGATGTTTGTGTTTTTGAATTGACGAAGAGCATTGGCATCTCATTCCTAGTTTATATTTTTAGAGATTCTGAGAATCCAAGTTGCTCAAAATACCAAAGTATGTTAACTTCAAACCAAAAGGCTAGACCCAAAACACCATTGTCATATCCTCAAACTCATAAGAAAATGAGAACTTGCAAGCATAAAGATGCTGAGAGAAGCTCCAAACTGCAGAATTTGCATGTGGGTGTCAAAACTAAAGGTGTTCAATCTCAAAGAATAGAGTTTCAGAAAACAATCAAAACAGAATTGACATTTTGTCAGCACAAATTGGACGCTGTGGAAAAGATCAAAGCTTTGAAGAGAGCCAGTACTTTCATGTGTGAAAATCCCTTTTTCATGGTAGTCATGCAGCCCTCATATGTCAATAATCAATATCGTCTGGCTTTAGATGGGAGAACATGGTATGCTATGTATAATATTCCCAAAATCAGTGCTGGCTGGGAAGAGTTTGTAATGGATAATAATTTGAAAGTGGGTGATGTTTGTGCTTTTGAAATGATTGGTATTGGCCTTTCATTCAAAGTATCCATTTTCAAAGATGCTGAAGATCAAAATTTCTCACCACCTCAAGGAAATCTGAAACTTGATGCTCTTAGTCAGATGCAGATCAGTATGCAAAATAGAGATCTTGGAATGGCTAAGTACTTGCTAATTCTTGTTCTCTCTCTCTGGCAGCATGTACCAATCAAATTTGCCAAAACATATCTTCATATAAAGAACAGTACTGGGAGTGTCAAATTTCAGATACAAGATAGAGTTTGGTCTGTTGGATACATATTCAGAAGATCCGGTAAGCAACACATTGCTGAATTTTCTGGTGGATGGAATCAATTTCGTAAGGATAATGACTTGAAAGTAGGTGATATTTGTGTCTTTGAGCTCTTTCAGAGAATACATGTTACATTTCAAGTGACAATTTTTCGAGCCACTAAATACCCTAGTCATACAAAGGATCCAGGTAAAGCTAATGTTCAGTCACAAAACCCGATCCTGTTTGATCTGCAGAATGAAAATTTTAAACCTTTCTCTTGA 2076 0.3704 MVSHCLRRNVIRFFKIILKSTLQEGKLYSQKVPNNFIRKYGAGLSNPVFLKPPDGTEWEVYWTKHDGEVWFEKGWKQLAKYYSLGHGHLLMFKYVGTCHFEVYIFDMSALEIDYPLHGTHDKKDKLEQIRDYSIEILDEISQKERPKSPSSSLCPYKKTRNSTSRGAERTSNLKNLHQGVQIQDSLNEGEGKKFEKSKDAELNSINQESEEDIGRSKFSTIKYPNSKAITPRKKPLTVIEKAKALQRVSTFMSKNPYFKIAMQPSYIFKRTLSVPAKFAKHYLKKKKEGDVLLQVLDGRTWCAKYSVCLGGSKQKFKISCGWNLFAKDNNLKVGDVCVFELTKSIGISFLVYIFRDSENPSCSKYQSMLTSNQKARPKTPLSYPQTHKKMRTCKHKDAERSSKLQNLHVGVKTKGVQSQRIEFQKTIKTELTFCQHKLDAVEKIKALKRASTFMCENPFFMVVMQPSYVNNQYRLALDGRTWYAMYNIPKISAGWEEFVMDNNLKVGDVCAFEMIGIGLSFKVSIFKDAEDQNFSPPQGNLKLDALSQMQISMQNRDLGMAKYLLILVLSLWQHVPIKFAKTYLHIKNSTGSVKFQIQDRVWSVGYIFRRSGKQHIAEFSGGWNQFRKDNDLKVGDICVFELFQRIHVTFQVTIFRATKYPSHTKDPGKANVQSQNPILFDLQNENFKPFS 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g2014 691 SMART B3_2 13 108 IPR003340 GO:0003677
Glsi09g2014 691 SMART B3_2 564 658 IPR003340 GO:0003677
Glsi09g2014 691 SMART B3_2 460 529 IPR003340 GO:0003677
Glsi09g2014 691 SMART B3_2 258 357 IPR003340 GO:0003677
Glsi09g2014 691 MobiDBLite consensus disorder prediction 140 170 - -
Glsi09g2014 691 CDD B3_DNA 572 656 IPR003340 GO:0003677
Glsi09g2014 691 Pfam B3 DNA binding domain 258 355 IPR003340 GO:0003677
Glsi09g2014 691 Pfam B3 DNA binding domain 575 657 IPR003340 GO:0003677
Glsi09g2014 691 Pfam B3 DNA binding domain 24 106 IPR003340 GO:0003677
Glsi09g2014 691 SUPERFAMILY DNA-binding pseudobarrel domain 456 526 IPR015300 -
Glsi09g2014 691 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Glsi09g2014 691 ProSiteProfiles B3 DNA-binding domain profile. 479 529 IPR003340 GO:0003677
Glsi09g2014 691 SUPERFAMILY DNA-binding pseudobarrel domain 253 356 IPR015300 -
Glsi09g2014 691 CDD B3_DNA 256 355 IPR003340 GO:0003677
Glsi09g2014 691 ProSiteProfiles B3 DNA-binding domain profile. 257 357 IPR003340 GO:0003677
Glsi09g2014 691 CDD B3_DNA 458 527 IPR003340 GO:0003677
Glsi09g2014 691 Gene3D - 439 477 IPR015300 -
Glsi09g2014 691 Gene3D - 236 359 IPR015300 -
Glsi09g2014 691 Gene3D - 478 530 IPR015300 -
Glsi09g2014 691 Gene3D - 547 661 IPR015300 -
Glsi09g2014 691 MobiDBLite consensus disorder prediction 146 170 - -
Glsi09g2014 691 Gene3D - 7 109 IPR015300 -
Glsi09g2014 691 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 386 531 IPR044837 -
Glsi09g2014 691 SUPERFAMILY DNA-binding pseudobarrel domain 572 658 IPR015300 -
Glsi09g2014 691 SUPERFAMILY DNA-binding pseudobarrel domain 9 115 IPR015300 -
Glsi09g2014 691 ProSiteProfiles B3 DNA-binding domain profile. 575 658 IPR003340 GO:0003677
Glsi09g2014 691 CDD B3_DNA 12 106 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g2014 Glsi-ChrGlsi09 30208681 30212541 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g2014 574 668 B3 DNA Binding Superfamily AT3G18990 33.684 5.90e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi09g2014 B3 2.3e-19 CL0405