Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1961 ATGATTAGAGGGAAAGATCTCCCCTGTGGTCTTGACTCTGACGGTGAGAACTCTCGGAGCAAGCCGTCAAAGCACAATTTTGACCATAGTAAGGGCAACCCAGAAGAGAAAATAGGTTATCCGGAAAAGGGTACCTATTTTCTTAAAGATTCAGAGGTGGGTGGTGATGGGATTCAATCAAAACCAACAAAGGTTGGGACTTCAGGCTTACAAGAGCTGACTCTCAGCTACCTCTGTGATAACCAAAAACTGTTTCTTCCTGAGAAAGAGATTCCTGGTAAAAGTTTACTGAATTCCTTGGAAAAAGGAAGTTGCAAAGGTAAAGAAGTTATCATTTCAGAGAATTCAAATCAGGATGAAAAATGGGTCGAAAGGGACTTTATGAATTTGAGTGAAACTAGGGAAAATTCTTCGAAACGATCGGTTGAAGAAGAGCTTGAAAGGGAAATTAGGGACAAGAAGCCGAAGCTCGAGACGCTTAATCTCTCTCTTGCTTTGCCTGATATCTCACTTTCTCTCACAGCGTCAAACGCGCTACAAAACGGTGATCAACCAGTCAGGCCAAAGCCTAGCAGACCATCAACCACTACTTACTCAAATGATTATACAACGGCTTCTCTATCATACTCGTATTCTCATCCGTTCTCGCACAACCCAAGTTGCTCGCTTACTCGTAATTCTACAGATAATTTTGAGTATTCAGTCAGCAAAGATGACCATATTTGGAACTGTGGGGAGGGGACTAATGGGTCGGTTCATAGTCGGTTCAAGCCAATAGGAGATGGGGTTGCTTTGTCGAATCATGGTGGTGGGATTAATTCGGTTATGCAGGGTAATAGTCAGTATAAAACTACAAGTTCAGATAACCATTCCTTTTTCCCGTCAGAATTGCCTGCCAGGCCAAGATTTGAAGCTCAGTCAGGGGACTCCAGAGGAAGGAATTCTGAGAATATGAGAGGCTTGGAAGCCTTAGATAGTGGGAAAATAAGGAAGCTTTCTAGACCAGAGAGAATTCTCCGAGAGACTGTTTTGGAGTCTATCCCTGCCATGGCATTGACATTTCAGGAACTTACTGATGAAGTAATCGCATCAACTAAGGAATACTTAAAGAATCTCATTGAAATGCCTGAGAAGAAGGAGGAATTGGCCAGTCTCCAAAATCGGCTTGAACGAAGATCTGACCTTACGAAGGAGACACTTTCTAAGTGCCACAAAGGGCAATTAGAGATTTTAGTGGCAGTCAAGATGGGCCTTGGAAGCTTCTTATCAGGCAAAATTCAGTTCTCTGAGATGGTAGAGATTTTCTTGTATACAAGATGTAGAAATGTGAACTGCAAGAGCGTGCTGCCTGTGGATGATTGTGACTGCAAGTTTTGCTCTGGAAATAAGGGATTTTGCAGTTCTTGCATGTGTCCTGTCTGTTTGAACTTTGATTGTGCAAACAACACATGCAGTTGGGTTGGTTGTGATGTTTGTTCCCACTGGTGCCATGCTGCCTGTGGCATTAAGAGGAATCTTATCAAACCTGGGCCTAGCTTAAAAGGGCCATCAGGGACCACTGAGATGCAGTTTCATTGCATTGGTTGTGGACATGCTTCAGAAATGTTTGGGTTCGTTAAAGACGTGTTCATGTGTTGTGCAAAGGATTGGGGTCTAGAAACCCTGGCGAAAGAGCTTGACTGTGTAAGGAGGATTTTCAAAGGAAGTGAAGATCGCAAAGGGAAGGAACTGCATGTTAAAACTGATGACATGCTGTTTAAGCTTCAAACTAAAATGGTATCTCCTTTGGATGCCTGCAATTACATCCTTCAGTTTTTCAACTTTGCAGATGGCATGTCAGACTTTCCTGCTTCTGGTATATCATCAAAGGATCTGGCAGCATCTCAAGCTAACCTTAGGAAGGAAGCAACATCTCTGTCACAATCAAATTCTCTAATATCAAAATATACTTATAACTCAAGCTATTCTAGGTCACATTGTGATGTCCTGTCAAATGATCATCATCAGAAAGATTTCAAAGCCTCCCTCTTAAGTGAACTGAAAAATGAGAGTGATTTCCAGTTGGGGGCTTTGTTAAGGAAAGGGGGGCTTGAAAGCTTGGAGAGCATTGTGAGGATAAAGGAAGCAGAAGCCAGAATGTTCCAAACCAAGGCAGATGAAGCACGGAGAGAGGCGGAAGGGTTCCAGAGGATGATTAGGACAAAGACTGCGCAGATGGAAGAAGAGTACTCTGAAAGGCTTGCCAAGCTCTCTCTGCAAGAGACGGAGGAAACAAGAAGGAAAAAATTGGAGGAATTGAAGGTCTTAGAAAATTCCCATTGTGATTACCATAAAATGAAAATGAGAATGCAAGATGAGATTGCTGGTTTGTTGGAGAGAATGGAGGCAACAAAGCAGCAATGGGTTTAA 2409 0.4271 MIRGKDLPCGLDSDGENSRSKPSKHNFDHSKGNPEEKIGYPEKGTYFLKDSEVGGDGIQSKPTKVGTSGLQELTLSYLCDNQKLFLPEKEIPGKSLLNSLEKGSCKGKEVIISENSNQDEKWVERDFMNLSETRENSSKRSVEEELEREIRDKKPKLETLNLSLALPDISLSLTASNALQNGDQPVRPKPSRPSTTTYSNDYTTASLSYSYSHPFSHNPSCSLTRNSTDNFEYSVSKDDHIWNCGEGTNGSVHSRFKPIGDGVALSNHGGGINSVMQGNSQYKTTSSDNHSFFPSELPARPRFEAQSGDSRGRNSENMRGLEALDSGKIRKLSRPERILRETVLESIPAMALTFQELTDEVIASTKEYLKNLIEMPEKKEELASLQNRLERRSDLTKETLSKCHKGQLEILVAVKMGLGSFLSGKIQFSEMVEIFLYTRCRNVNCKSVLPVDDCDCKFCSGNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAACGIKRNLIKPGPSLKGPSGTTEMQFHCIGCGHASEMFGFVKDVFMCCAKDWGLETLAKELDCVRRIFKGSEDRKGKELHVKTDDMLFKLQTKMVSPLDACNYILQFFNFADGMSDFPASGISSKDLAASQANLRKEATSLSQSNSLISKYTYNSSYSRSHCDVLSNDHHQKDFKASLLSELKNESDFQLGALLRKGGLESLESIVRIKEAEARMFQTKADEARREAEGFQRMIRTKTAQMEEEYSERLAKLSLQETEETRRKKLEELKVLENSHCDYHKMKMRMQDEIAGLLERMEATKQQWV 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1961 802 Pfam PHD - plant homeodomain finger protein 440 564 IPR032881 -
Glsi09g1961 802 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 353 375 IPR004082 -
Glsi09g1961 802 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 737 759 IPR004082 -
Glsi09g1961 802 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 698 718 IPR004082 -
Glsi09g1961 802 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 392 407 IPR004082 -
Glsi09g1961 802 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 431 452 IPR004082 -
Glsi09g1961 802 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 477 497 IPR004082 -
Glsi09g1961 802 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 550 569 IPR004082 -
Glsi09g1961 802 MobiDBLite consensus disorder prediction 1 38 - -
Glsi09g1961 802 MobiDBLite consensus disorder prediction 1 43 - -
Glsi09g1961 802 MobiDBLite consensus disorder prediction 177 200 - -
Glsi09g1961 802 Pfam Coiled-coil region of Oberon 666 791 IPR032535 -
Glsi09g1961 802 Coils Coil 704 738 - -
Glsi09g1961 802 Coils Coil 752 772 - -
Glsi09g1961 802 CDD PHD_OBE1_like 470 529 IPR047578 -
Glsi09g1961 802 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 108 801 IPR004082 -
Glsi09g1961 802 Coils Coil 780 800 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1961 Glsi-ChrGlsi09 24025548 24031557 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1961 440 644 PHD Gene Family AT5G57380 23.902 1.08e-09 60.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g1961 09 24025548 24031557 Glsi09g1961 09 24025548 24031557 ECH