Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1959 ATGGTGACACCAAACTTGAACTTGGAACCTGAAAATCATTCAGAAGTCAGCAGCCAAGTAGCTTCCAATATATCCTTGCAAGAAACATCCCGTGACCTTACCAAGGATAGCACCACCACTTCTTCCTGTCTTACAAATCTAACAAAGGCTGAACCCAATCCAGGGTCTGTTTCCCTTGACTTGACACTCAACTTCAATTCCAGCGAGGGTGAGTTGAAGCGACCGTGTGATGCTAGCAGTGAAGTGGATGCTGAAGCTCCTGCTTCAGGATCAGCAATTCCCAGGGTTTTCTCTTGTAATTACTGTAGGCGGAAGTTCTTCAGCTCCCAGGCATTGGGGGGCCATCAAAATGCTCATAAAAGAGAGAGGACAATGGCGAAACGAGCAATGCGAATGGGGATGTTCACCGAAAGGTATACAAGCTTGGCATCTCTGCCCCTTCACGGTTCTGCGTTCCGGTCTCTTGGTATTGAAGCTCATGCTGCAATGCACCAAAGACCTATGCCATCACTGCAGGTTCCCGATCTAAGAGCCGGAGCAAAATTTGAGAGAGACTATTTTGGATCACCCATGTTCATGGAAGATGATGATAATATGGGTCTGTTTTGGCCTGGGAGCTTTAGGCAGGTGGATGAGGGAGCTGGTGTTAATATGGGACATGAACACGCTCAAAATTCGAATACTAGTTTTGTAGCAATTGCACCATCACCACCACTACCACCACCACAACCACATCCACAACCACAAACATCCACATCTCCTGATCTCACACTGAAGCTTTGA 783 0.4713 MVTPNLNLEPENHSEVSSQVASNISLQETSRDLTKDSTTTSSCLTNLTKAEPNPGSVSLDLTLNFNSSEGELKRPCDASSEVDAEAPASGSAIPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSAFRSLGIEAHAAMHQRPMPSLQVPDLRAGAKFERDYFGSPMFMEDDDNMGLFWPGSFRQVDEGAGVNMGHEHAQNSNTSFVAIAPSPPLPPPQPHPQPQTSTSPDLTLKL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1959 260 Gene3D Classic Zinc Finger 90 144 - -
Glsi09g1959 260 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 15 174 IPR044246 GO:0009788
Glsi09g1959 260 MobiDBLite consensus disorder prediction 234 249 - -
Glsi09g1959 260 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Glsi09g1959 260 FunFam Zinc finger protein 2 76 143 - -
Glsi09g1959 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Glsi09g1959 260 MobiDBLite consensus disorder prediction 230 260 - -
Glsi09g1959 260 SUPERFAMILY beta-beta-alpha zinc fingers 95 125 IPR036236 -
Glsi09g1959 260 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1959 Glsi-ChrGlsi09 23919194 23919976 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1959 91 260 C2H2 Transcription Factor Family AT1G66140 44.330 4.32e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi09g1959 None None None